View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_11 (Length: 527)
Name: NF15449_low_11
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 11881478 - 11881123
Alignment:
| Q |
1 |
atttgtagtagtaaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11881478 |
atttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctc |
11881379 |
T |
|
| Q |
101 |
gtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11881378 |
gtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcatatagggcagccttg |
11881279 |
T |
|
| Q |
201 |
cacactgtggaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttc |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| | |
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| T |
11881278 |
cacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgacaattttgctcc |
11881179 |
T |
|
| Q |
301 |
cggctttgcatgttacctcaacaacagcacctgc-cccaaaacaaaattagtttac |
355 |
Q |
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||||||||||||| |||||||||||||| ||||| |||| || ||||||||||||| |
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| T |
11881178 |
cggctttgcatgtcacctcaacaacagctcctgcacccataataaaattagtttac |
11881123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 11903971 - 11903623
Alignment:
| Q |
8 |
gtagtaaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttg |
107 |
Q |
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| T |
11903971 |
gtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttg |
11903872 |
T |
|
| Q |
108 |
tctttggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactg |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
11903871 |
tctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaagggtagccttgcacactg |
11903772 |
T |
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| Q |
208 |
tggaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccggcttt |
307 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||| |
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| T |
11903771 |
tcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgacaattttgctcccggcttt |
11903672 |
T |
|
| Q |
308 |
gcatgttacctcaacaacagcacctgc-cccaaaacaaaattagtttac |
355 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||| || ||||||||||||| |
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|
| T |
11903671 |
gcatgtcacctcaacaacagctcctgcacccataataaaattagtttac |
11903623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 11890844 - 11890500
Alignment:
| Q |
1 |
atttgtagtagtaaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890844 |
atttgtagtagtaaggagttggtgaaggcttggacttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctc |
11890745 |
T |
|
| Q |
101 |
gtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11890744 |
gtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaagggcagccttg |
11890645 |
T |
|
| Q |
201 |
cacactgtggaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttc |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||| | |
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| T |
11890644 |
cacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttgatgattttgctcc |
11890545 |
T |
|
| Q |
301 |
cggctttgcatgttacctcaacaacagcacctgccccaaaacaaa |
345 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||| |||||| |
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| T |
11890544 |
cggctttgcatgtcacttcaacaacagcacctgtcccataacaaa |
11890500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 3 - 332
Target Start/End: Original strand, 52819823 - 52820152
Alignment:
| Q |
3 |
ttgtagtagtaaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||| |||| ||||| |||||||| || ||||||||||||||||||||||| || | |
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| T |
52819823 |
ttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagccttgagcacaacttcat |
52819922 |
T |
|
| Q |
103 |
acttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgca |
202 |
Q |
| |
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|||||||||| ||||| | | ||| | ||||| | ||| ||||| |||||||| |||||||| || | ||||||||||||||||| || ||||| |
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| T |
52819923 |
acttgtctttagattttaccttcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcatatagtttggctttgca |
52820022 |
T |
|
| Q |
203 |
cactgtggaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccg |
302 |
Q |
| |
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||| ||||||||||| ||||||| ||||| || ||||||||||||||||||||| ||||||||||||| |||||||| | ||| || ||||| |
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| T |
52820023 |
caccacagaaccatattttacatagttaaagtttggaattgtgatggcatactttccattactcttagttttaccgtaagccttgatgatgttccttcca |
52820122 |
T |
|
| Q |
303 |
gctttgcatgttacctcaacaacagcacct |
332 |
Q |
| |
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||||||||| | |||||||||||||||||| |
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|
| T |
52820123 |
gctttgcatttgacctcaacaacagcacct |
52820152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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