View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_low_13 (Length: 510)
Name: NF15449_low_13
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 31567424 - 31566937
Alignment:
| Q |
18 |
gtagagaagaagcagaagatgagagaacgatttgttgttgaggagctttcagttgaaacggtgatgtttttgtatcatttgtatcaaaatgggtattttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31567424 |
gtagagaagaagcagaagatgagagaacgatttgttgttgaggagctttcagttgaaacggtgatgtttttgtatcatttgtatcaaaatgggtattttg |
31567325 |
T |
|
| Q |
118 |
aagatgctaaatttggttatgtttatggaagatttaacattggttggtttgagactccttatgctttgggttatgttaagtttgctgcaaagaaatttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31567324 |
aagatgctaaatttggttatgtttatggaagatttaacattggttggtttgagactccttatgctttgggttatgttaagtttgctgcaaagaaatttgc |
31567225 |
T |
|
| Q |
218 |
caatgataatcttgaaatagctaagtaagttgtgactatgattagnnnnnnngtatattttctcttttgaattatgtttcttttgggtaggttgaattac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31567224 |
caatgataatcttgaaatagctaagtaagttgtgattatgattagtttttttgtatattttctcttttgaattatgtttcttttgggtagattgaattac |
31567125 |
T |
|
| Q |
318 |
tattatgttagattgttgcatttatatgttttattcagtgagaatatgatttttaagaaaatgtgaactagtgataaatttgatggcattgtgaaagaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31567124 |
tattatgttagattgttgcatttatatgttttattcagtgagaatatgatttttaagaaaatgtgaactagtgataaatttgatggcattgtgaaagaga |
31567025 |
T |
|
| Q |
418 |
aaagccaatttcttgttttgtgttccatttcatcctcaagtacgccatgctgcgttctgaggtattgcccgctttgggttgttctgtg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
31567024 |
aaagccaatttcttgttttgtgttccatttcatcctcaagtatgccatgctgcgttctgaggtattgcccactttgggttgttgtgtg |
31566937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 31562248 - 31562018
Alignment:
| Q |
18 |
gtagagaagaagcagaagatgagagaacgatttgttgttgaggagctttcagttgaaacggtgatgtttttgtatcatttgtatcaaaatgggtattttg |
117 |
Q |
| |
|
||||||||||||||||| | || |||| |||||||| | |||||||||||||||| | ||| ||||||||| | ||||| || ||||||||||||||| |
|
|
| T |
31562248 |
gtagagaagaagcagaacaagaaggaaccatttgttgctaaggagctttcagttgatatggtcatgtttttgaagcatttataccaaaatgggtatttta |
31562149 |
T |
|
| Q |
118 |
aagatgctaaatttggttatgttta-tggaagatttaacattggttggtttgagactccttatgctttgggttatgttaagtttgctgcaaagaaatttg |
216 |
Q |
| |
|
|||||||||||||| || ||||| | ||||||| | ||| ||||||| | | | ||||| ||||| |||| |||||||||||| | |||||||| |
|
|
| T |
31562148 |
aagatgctaaattt-tctaagtttagtacaagatttcaacttgtttggtttaacaaacaatatgcattgggctatgctaagtttgctgcgatgaaatttg |
31562050 |
T |
|
| Q |
217 |
ccaatgataatcttgaaatagctaagtaagtt |
248 |
Q |
| |
|
||| |||||||| | |||| ||| |||||||| |
|
|
| T |
31562049 |
ccactgataatcctcaaatcgctgagtaagtt |
31562018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 494
Target Start/End: Complemental strand, 15710068 - 15710012
Alignment:
| Q |
438 |
tgttccatttcatcctcaagtacgccatgctgcgttctgaggtattgcccgctttgg |
494 |
Q |
| |
|
|||||| || || |||||||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
15710068 |
tgttcccttccaccctcaagtacgccacactgcgttccgaggtattgtccgctttgg |
15710012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University