View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_17 (Length: 478)
Name: NF15449_low_17
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 5 - 462
Target Start/End: Original strand, 42203715 - 42204180
Alignment:
| Q |
5 |
tgatatggattgttaggaacttatgatactgataatcttgtcctatgatttaattaaattaaatgggatactaactatttggtcgcaaagtgtaagcatt |
104 |
Q |
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| T |
42203715 |
tgatatggattgttaggaacttatgatactgataatcttgtcctatgatttaattaaattaaatgggatactaactatttggtcgcaaagtgtaagcatt |
42203814 |
T |
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| Q |
105 |
aacaatagctcaagaaatttgcaattgcctaagtttcatagtcaatattggtaaaatttctacaaacttgttttcatatagtagtagtattgtcagaaac |
204 |
Q |
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| T |
42203815 |
aacaatagctcaagaaatttgcaattgcctaagcttcatagtcaatattggtaaaatttctacaaactagttttcatatagtagtagtattgtcagaaac |
42203914 |
T |
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| Q |
205 |
acggataagctaaaatggcttgagtcgtacccgatacgcgtacatgccgaccgtgatatgccgttgatatacctcgatataccgcgatacagtcaattca |
304 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42203915 |
acggataagctaaaatggcttgagtcgtacccgacacgcatacatgccgaccgtgatatgccgttgatatacctcgatataccgcgatacagtcaattca |
42204014 |
T |
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| Q |
305 |
t--------tgttcagttttctagtacatgaatcaaactttcctcctccttaattactcctttctcctttaattacaccctctctctcctttaattgata |
396 |
Q |
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| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204015 |
tctcatgagtgaccagttttctagtacatgaatcaaactttcctcctccttaattactcctttctcctttaattacaccctctctctcctttaattgata |
42204114 |
T |
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| Q |
397 |
catgtaaattgtgatgtatctatacaattccacggttataaattgccaattttcaaaattggtttt |
462 |
Q |
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| T |
42204115 |
catgtaaattgtgatgtatctatacaattccacggttataaattgccaattttcaaaattggtttt |
42204180 |
T |
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