View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_18 (Length: 439)
Name: NF15449_low_18
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 33120522 - 33120919
Alignment:
| Q |
19 |
ttttttatgaacaaattgacctttaggaactaaattttttgtaattatgtaaattttattccaacattgttcagaaaaatttacctttagaataaattta |
118 |
Q |
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| T |
33120522 |
ttttttatgaacaaatttacctttaggaactaaattttttgtaattatgtaaattttaatccaatattgttcagaaaaatttaccttg-gaataaattta |
33120620 |
T |
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| Q |
119 |
aatccaatactctcctttagaatttttaaattctaagggtaaataatatgttataagtttnnnnnnnnnnnnnnnnnnnnn-tcaattgtgtgtttgaga |
217 |
Q |
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| T |
33120621 |
aatccaatactctcctttagaatttttaaattctaagggtaaataatatgttataagtttaaaaaaatgagagaaaaaaagatcaattgtgtgtttgaga |
33120720 |
T |
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| Q |
218 |
tgacaatattggcagaatgatagccaaccgccgag--ctcttttaaattctaaagaagtgatggttagtataattcattttatcaatattatcatctcaa |
315 |
Q |
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| T |
33120721 |
tgacaatattgacagaatgatagccaaccgccgagtactcttttaaattctaaagaagtgatggttagtataattcattccgtcaatattatcatctcaa |
33120820 |
T |
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| Q |
316 |
acgcacattcatctttttctctattgttttattgtacatcttgagatagttcaccttttgaaggcctggtcatcactaaaacacaacatttaggcctct |
414 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33120821 |
acgcacattcatctttttctctattgttttcttgtacatcttgagatagttcaccttttaaaggcctggtcatcactaaaacacaacatttaggcctct |
33120919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 45933825 - 45933881
Alignment:
| Q |
347 |
ttgtacatcttgagatagttcaccttttgaaggcctggtcatcactaaaacacaaca |
403 |
Q |
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|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
45933825 |
ttgtacctcttgagatagttcaccctttgaaggcttggtcatcactaaaacacaaca |
45933881 |
T |
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