View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_24 (Length: 394)
Name: NF15449_low_24
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 40 - 347
Target Start/End: Complemental strand, 45047754 - 45047443
Alignment:
| Q |
40 |
gtgttactcttcctcactggtcaggttgatgatcgaaccatccaaaaatatgagaaagaaagctgaggacaaaaaccgagtaagttgtagagtttttgtt |
139 |
Q |
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| T |
45047754 |
gtgttactcttcctcactggtcaggttgatgatcgaaccatccaaaaatatgagaaagaa-gctgaggacaaaaaccgagtaagttgtagagtttttgtt |
45047656 |
T |
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| Q |
140 |
ggtgattactgaatctgagaatataatctaataaat----gaatgaatccgtctgttttcattttattttactctctaaaataaaattgtcaagatgcat |
235 |
Q |
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| T |
45047655 |
ggtgattactgaatctgagaatataatctaataaatagttgaatgaatccgtctgttttcattttattttactctctaaaataaaattgtcaagatgcat |
45047556 |
T |
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| Q |
236 |
ggaattttgcaatctatatatcaaactcaaatggggatttgttatgccattgga-ccccactttcgcgaagtctcagttcaaactatgatggctaaatga |
334 |
Q |
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| T |
45047555 |
ggaattttgcaatttatatatcaaactcaaatggggatttgttatgccattggacccccactttcgcgaagtctcagttcaaactatgatggctaaatga |
45047456 |
T |
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| Q |
335 |
acacacacgttat |
347 |
Q |
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| T |
45047455 |
acacacacgttat |
45047443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 45041809 - 45041741
Alignment:
| Q |
44 |
tactcttcctcactggtcaggttgatgatcgaaccatccaaaaatatgagaaagaaagctgaggacaaaa |
113 |
Q |
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|||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||| |
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| T |
45041809 |
tacttttcctcagtggtcaggttgatgatcgaactatccaaaaatacgagaaag-aagctaaggacaaaa |
45041741 |
T |
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