View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_25 (Length: 390)
Name: NF15449_low_25
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 37054157 - 37054522
Alignment:
| Q |
10 |
tgagatgaaactctagatgaagttgttaatgaatgtaaagtaaagagtggcattttcaatggtggtgttggcggtggcggtggcggaggaggtggagagg |
109 |
Q |
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| T |
37054157 |
tgagatgaaactctagatgaagttgttaatgaatgtaaagtaaagagtggcattttcaatggtggtgttggtggtggcggcggaggaggaggtggagagg |
37054256 |
T |
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| Q |
110 |
aattagatgtttgtggacattggacaaaggtttcattttcaatctcttggtctttttgttttggactataaggtggttggtgagaatcatttgtgttttg |
209 |
Q |
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| T |
37054257 |
aattagatgtttgtggacattggacaaaggtttcattttcaatatcttggtctttttgttttggactataaggtggttggtgagaatcatttgtgttttg |
37054356 |
T |
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| Q |
210 |
tggagaactaggtaattggtttggtaataatgaaaatgaattttgcggtgacaataacaaagattgtgtgtcacttaggctaccagctgaagcattagaa |
309 |
Q |
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| T |
37054357 |
tggagaactaggtaattggtttggtaataatgaaaatgaattttgaggtgacaataacaaagattgtgtgtcacttaggctaccagctgaagcattagaa |
37054456 |
T |
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| Q |
310 |
agtcttgtatttgattgtgaatcaacaaatgaatgaaagctttcatcttctgatgaatcacaatct |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054457 |
agtcttgtatttgattgtgaatcaacaaatgaatgaaagctttcatcttctgatgaatcacaatct |
37054522 |
T |
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