View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_low_26 (Length: 357)

Name: NF15449_low_26
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_low_26
NF15449_low_26
[»] chr4 (15 HSPs)
chr4 (26-293)||(1979227-1979496)
chr4 (26-107)||(11899675-11899756)
chr4 (147-280)||(24520149-24520290)
chr4 (147-280)||(42265955-42266096)
chr4 (147-280)||(42270674-42270815)
chr4 (25-97)||(4877231-4877303)
chr4 (147-280)||(48697256-48697397)
chr4 (147-280)||(48701945-48702086)
chr4 (147-286)||(30945600-30945749)
chr4 (147-286)||(30950306-30950455)
chr4 (24-123)||(31192841-31192940)
chr4 (24-123)||(19667265-19667364)
chr4 (24-120)||(8804201-8804297)
chr4 (27-83)||(23065231-23065287)
chr4 (314-346)||(1979168-1979200)
[»] chr6 (15 HSPs)
chr6 (24-123)||(2946944-2947043)
chr6 (147-280)||(26976255-26976396)
chr6 (147-280)||(27874114-27874255)
chr6 (147-286)||(27878833-27878982)
chr6 (147-265)||(30986579-30986701)
chr6 (147-280)||(1234753-1234894)
chr6 (26-113)||(7225454-7225541)
chr6 (147-283)||(30966704-30966845)
chr6 (25-123)||(27966262-27966360)
chr6 (24-123)||(20130417-20130516)
chr6 (24-123)||(22202354-22202453)
chr6 (24-123)||(24478596-24478695)
chr6 (147-193)||(21966698-21966744)
chr6 (147-207)||(18968007-18968070)
chr6 (147-207)||(23012623-23012683)
[»] chr3 (9 HSPs)
chr3 (24-131)||(33818672-33818779)
chr3 (24-122)||(9008536-9008634)
chr3 (24-113)||(48574061-48574150)
chr3 (147-280)||(5818637-5818778)
chr3 (147-280)||(5823399-5823540)
chr3 (24-113)||(11428391-11428480)
chr3 (148-286)||(54545928-54546076)
chr3 (147-224)||(2817386-2817465)
chr3 (150-207)||(31204893-31204950)
[»] chr7 (5 HSPs)
chr7 (24-123)||(43017582-43017681)
chr7 (24-121)||(16435519-16435616)
chr7 (24-123)||(6112926-6113025)
chr7 (142-207)||(8138578-8138645)
chr7 (147-207)||(16183755-16183818)
[»] chr2 (16 HSPs)
chr2 (24-113)||(7687927-7688016)
chr2 (147-280)||(28715818-28715955)
chr2 (147-280)||(5198779-5198920)
chr2 (29-113)||(10379845-10379929)
chr2 (24-123)||(38455619-38455718)
chr2 (24-123)||(13803935-13804034)
chr2 (24-123)||(35671308-35671407)
chr2 (147-245)||(15602968-15603070)
chr2 (24-120)||(19699190-19699286)
chr2 (146-261)||(31593031-31593144)
chr2 (24-123)||(8355853-8355952)
chr2 (24-123)||(27092537-27092636)
chr2 (147-183)||(825635-825671)
chr2 (48-116)||(20035635-20035703)
chr2 (147-183)||(830291-830327)
chr2 (148-191)||(30397034-30397078)
[»] scaffold0057 (1 HSPs)
scaffold0057 (24-113)||(77898-77987)
[»] scaffold0003 (1 HSPs)
scaffold0003 (24-121)||(25149-25246)
[»] chr1 (5 HSPs)
chr1 (24-113)||(6192138-6192227)
chr1 (24-113)||(21872687-21872776)
chr1 (147-207)||(30697238-30697300)
chr1 (147-207)||(4130215-4130278)
chr1 (147-207)||(46191361-46191424)
[»] chr5 (8 HSPs)
chr5 (24-113)||(31129519-31129608)
chr5 (24-113)||(33259662-33259751)
chr5 (147-280)||(41718462-41718603)
chr5 (147-280)||(41723188-41723329)
chr5 (147-286)||(29585424-29585571)
chr5 (147-286)||(34352294-34352441)
chr5 (147-286)||(34360002-34360149)
chr5 (61-98)||(28110241-28110278)
[»] chr8 (2 HSPs)
chr8 (147-280)||(9439496-9439637)
chr8 (147-280)||(9444216-9444357)
[»] scaffold0002 (2 HSPs)
scaffold0002 (24-108)||(476842-476926)
scaffold0002 (24-108)||(483362-483446)
[»] scaffold0074 (1 HSPs)
scaffold0074 (147-207)||(27350-27413)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 293
Target Start/End: Complemental strand, 1979496 - 1979227
Alignment:
Q  26 gatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctgct 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1979496 gatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaaccgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctgct 1979397  T
Q  126 gtagtgnnnnnnncatgaggtaagagtagagaactttcactaagaggaagaaattacacgacctctctaaatgcaaggagagtatatttacca--ctctc 223  Q
    ||||||       ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||    
T  1979396 gtagtgaaaaaagcatgaggtaagagtagataactttcagtaagaggaagaaattacacgacctctctaaatgcaaggagggtatatttaccactctctc 1979297  T
Q  224 ttataaacaggagaatattaacactaactaggagaaacctcacatgtgaaactatttcttctccgtattt 293  Q
    ||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  1979296 ttataaacaggagaatactagcactaaccaggagaaacctcacatttgaaactatttcttctccgtattt 1979227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 11899675 - 11899756
Alignment:
Q  26 gatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatg 107  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  11899675 gatgtgaaaggatgtagatttaccacatcatgtcaccttacatcggttgtaaactgatatgaaaactcattttcaactgatg 11899756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 24520149 - 24520290
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| | ||||||  |||||||||||| ||||||||       
T  24520149 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatact 24520248  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  24520249 aactaacacaaactaggagaaacctcacaggagaaactattt 24520290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 42266096 - 42265955
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgacctctct--aaatgcaaggagagtatatttaccactctct--tataaacaggagaatat- 241  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||  |||| ||||||||||| | ||||||||||||  |||||| |||||||||      
T  42266096 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 42265997  T
Q  242 ---taacactaactaggagaaacctcacatgtgaaactattt 280  Q
       |||||| ||||||||||||||||||| | ||| ||||||    
T  42265996 aactaacacaaactaggagaaacctcacaggagaagctattt 42265955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 42270815 - 42270674
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgacctctct--aaatgcaaggagagtatatttaccactctct--tataaacaggagaatat- 241  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||  |||| ||||||||||| | ||||||||||||  |||||| |||||||||      
T  42270815 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 42270716  T
Q  242 ---taacactaactaggagaaacctcacatgtgaaactattt 280  Q
       |||||| ||||||||||||||||||| | ||| ||||||    
T  42270715 aactaacacaaactaggagaaacctcacaggagaagctattt 42270674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 4877231 - 4877303
Alignment:
Q  25 tgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattt 97  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||    
T  4877231 tgatgtgaaaggatgtggacttaccacatcatatcaccttacatcggtggcaaactgatgtgaaaaatcattt 4877303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 48697256 - 48697397
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  48697256 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 48697355  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  48697356 aactaacacaaactaggagaaacctcacaggagaaactattt 48697397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 48701945 - 48702086
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  48701945 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 48702044  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  48702045 aactaacacaaactaggagaaacctcacaggagaaactattt 48702086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 30945600 - 30945749
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| |||||||||||||  ||  |||||||||| ||||||||||| | ||||||  |||||||||||| ||||||||       
T  30945600 aagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 30945699  T
Q  240 ---attaacactaactaggagaaacctcacatgtgaaactatttcttctc 286  Q
       | |||||||| ||||||||||||||||| | ||||||| || |||||    
T  30945700 aacactaacactacctaggagaaacctcacaggagaaactaatttttctc 30945749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 30950306 - 30950455
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| |||||||||||||  ||  |||||||||| |||||| |||| | ||||||  |||||||||||| ||||||||       
T  30950306 aagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaataca 30950405  T
Q  240 ---attaacactaactaggagaaacctcacatgtgaaactatttcttctc 286  Q
       | |||||||| ||||||||||||||||| | ||||||| || |||||    
T  30950406 aacactaacactacctaggagaaacctcacaggagaaactaatttttctc 30950455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 31192841 - 31192940
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| |||||| || ||| |||||||| ||||||||||| |||| || |||||| ||||| |  |||||||||||||||||||||| ||||||    
T  31192841 ctgatgtgaaaagatgtgaacatactacatcatgacaccttacatcagttgccacctgatgcgaaaagtgcttttcaactgatgtgaaaaatcctttctg 31192940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 19667364 - 19667265
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| |||| |||| ||| |||||||| ||||||||||| |||| || |||||| ||||| |  |||| || |||||||||||||||||||||    
T  19667364 ctgatgtgaaaagatgcggacatactacatcatgacaccttacatcagttgccacctgatgcgaaaagtgctttttaattgatgtgaaaaatcatttctg 19667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 8804201 - 8804297
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcattt 120  Q
    ||||||||||| |||| | || ||| |||||||| ||||||||||| |||| || ||||||  |||| |  ||||||||||||||||||||||||||    
T  8804201 ctgatgtgaaaagatgcgaacatactacatcatgacaccttacatcagttgccacctgatgcaaaaagtacttttcaactgatgtgaaaaatcattt 8804297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 23065287 - 23065231
Alignment:
Q  27 atgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgat 83  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||||| || |||||    
T  23065287 atgtgaaaggatgtagacttaccacgtcatgtcatcttacatcggttgccacctgat 23065231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 346
Target Start/End: Complemental strand, 1979200 - 1979168
Alignment:
Q  314 aacaagtaaatacacttaatgttgtgcttctct 346  Q
    |||||||||||||||||||||||||||||||||    
T  1979200 aacaagtaaatacacttaatgttgtgcttctct 1979168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 2947043 - 2946944
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||||||||| |||| ||||||||||||||    
T  2947043 ctgatgtgaaaggatgtggacttaccacatcatatcaccttacatcggtggcaaactgatgtgaaaaatcattttcaactaatgtaaaaaatcatttctg 2946944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 26976255 - 26976396
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| | ||||||  |||||||||||| ||||||||       
T  26976255 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatact 26976354  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  26976355 aactaacacaaactaggagaaacctcacaggagaaactattt 26976396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 27874114 - 27874255
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgacctctct--aaatgcaaggagagtatatttaccactctct--tataaacaggagaatat- 241  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||  |||| ||||||||||| | ||||||||||||  |||||| |||||||||      
T  27874114 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 27874213  T
Q  242 ---taacactaactaggagaaacctcacatgtgaaactattt 280  Q
       |||||| ||||||||||||||||||| | ||| ||||||    
T  27874214 aactaacacaaactaggagaaacctcacaggagaagctattt 27874255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 27878833 - 27878982
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||||| ||||||||||| | ||||||  |||||||||||| ||||||||       
T  27878833 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 27878932  T
Q  240 ---attaacactaactaggagaaacctcacatgtgaaactatttcttctc 286  Q
       | |||||||| ||||||||||||||||| | ||||||| || |||||    
T  27878933 aacactaacactacctaggagaaacctcacaggagaaactaatttttctc 27878982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 30986701 - 30986579
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaatatt 242  Q
    ||||||||||||||||||||||| |||||||||| || |||  |||||||||||||||||||||| | ||||||  ||||||| |||| || |||||| |    
T  30986701 aagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatact 30986602  T
Q  243 aacactaactaggagaaacctca 265  Q
     |||||| |||||||||||||||    
T  30986601 gacactacctaggagaaacctca 30986579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 1234894 - 1234753
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  1234894 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 1234795  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  1234794 aactaacacaaactaggagaaacctcacaggagaaactattt 1234753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 7225454 - 7225541
Alignment:
Q  26 gatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||| ||||||||| |||||||||||||||||||||||||||| ||||| | | ||||| |||| ||||||||||||||||| ||||    
T  7225454 gatgtaaaaggatgttgacttaccacatcatgtcaccttacatctgttgtgacccgatgtaaaaactcattttcaactgatgtaaaaa 7225541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 147 - 283
Target Start/End: Complemental strand, 30966845 - 30966704
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaatatt 242  Q
    ||||||||||||||||||||||| |||||||||| ||  ||  |||||||||||||||||||||| | ||||||  ||||||| |||| || |||||| |    
T  30966845 aagagtagagaactttcactaagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaatact 30966746  T
Q  243 aacactaactaggagaaacctcacatgt-gaaactatttctt 283  Q
     |  ||| ||||||||||||||||| || |||||||||||||    
T  30966745 gaggctacctaggagaaacctcacaagtagaaactatttctt 30966704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 27966262 - 27966360
Alignment:
Q  25 tgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    |||||||||| | |||| || | ||||||||| ||||||||||||||||| || |||||||||||| |  ||||||||||||||||||| | |||||||    
T  27966262 tgatgtgaaatggtgtgcacattccacatcatatcaccttacatcggttgccacctgatgtgaaaagtagttttcaactgatgtgaaaacttatttctg 27966360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 20130516 - 20130417
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| |||||| || ||| ||||||| |||| ||||||| |||| || ||||||  |||| |  |||||||||||||||||||||| ||||||    
T  20130516 ctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttctg 20130417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 22202354 - 22202453
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| |||||| || ||| ||||||| |||| ||||||| |||| || ||||||  |||| |  |||||||||||||||||||||| ||||||    
T  22202354 ctgatgtgaaaagatgtgaacatactacatcatatcactttacatcagttgccacctgatgcaaaaagtgtttttcaactgatgtgaaaaatcctttctg 22202453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 24478596 - 24478695
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| || ||| || | |||||||||| ||||||||||| |||| || |||||||||||| |  |||  |||||||||||||| | |||||||    
T  24478596 ctgatgtgaaatgacgtgcacattccacatcatgacaccttacatcagttgccatctgatgtgaaaagtagtttctaactgatgtgaaaacttatttctg 24478695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 21966744 - 21966698
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgacctctct 193  Q
    ||||||||||||||||||||||  ||||||||||| | |||||||||    
T  21966744 aagagtagagaactttcactaaatggaagaaattataagacctctct 21966698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 18968070 - 18968007
Alignment:
Q  147 aagagtagagaactttcactaagaggaaga-aattacacgac--ctctctaaatgcaaggagag 207  Q
    ||||||||| ||||||||||||| |||||| ||||||| |||  |||||||||| |||||||||    
T  18968070 aagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagag 18968007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 23012623 - 23012683
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgacctctctaaatgcaaggagag 207  Q
    ||||||||||||||||||||||| |  ||||||| || ||||||| ||||| ||| |||||    
T  23012623 aagagtagagaactttcactaagtgagagaaatttcaagacctctttaaatacaatgagag 23012683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 33818672 - 33818779
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||||| |||||||||| |||||| |||||||    
T  33818672 ctgaagtgaaaggatgtggacttaccacatcatgacaccttacatcagttgcaaactgatgtgaaaaatcatttccaactgatgtaaaaaataatttctg 33818771  T
Q  124 ctgtagtg 131  Q
    | ||||||    
T  33818772 cagtagtg 33818779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 9008634 - 9008536
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttct 122  Q
    ||||| |||||||||||||||||| |||||||| |||| ||||||||||||  |||||||| ||||||||||||||||||||||| |||||||||||||    
T  9008634 ctgatctgaaaggatgtggacttagcacatcatatcactttacatcggttgcaaactgatgcgaaaaatcattttcaactgatgtaaaaaatcatttct 9008536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 48574061 - 48574150
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| |||| || |||||||||||| ||||||||||||||||| ||||    
T  48574061 ctgatgtgaaagggtgtggacttaccacatcatgacaccttacatcagttgccacctgatgtgaaaactcattttcaactgatgtaaaaa 48574150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 5818637 - 5818778
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| | ||||||  |||||||||||| ||||||||       
T  5818637 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatact 5818736  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  5818737 aactaacacaaactaggagaaacctcacaggagaaactattt 5818778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 5823399 - 5823540
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| | ||||||  |||||||||||| ||||||||       
T  5823399 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatact 5823498  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  5823499 aactaacacaaactaggagaaacctcacaggagaaactattt 5823540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 11428391 - 11428480
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| |||| || ||||| | |||| |||||| |||||||||| ||||    
T  11428391 ctgatgtaaaaggatgtggacttaccacatcatatcaccttacatcagttgccacctgatttaaaaactcatttccaactgatgtaaaaa 11428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 286
Target Start/End: Complemental strand, 54546076 - 54545928
Alignment:
Q  148 agagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat---- 239  Q
    |||||||||||||||||||||| ||| ||||||||| |||  |||||||| | ||||||||||| | ||||||  |||||||||||| ||||||||        
T  54546076 agagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaa 54545977  T
Q  240 --attaacactaactaggagaaacctcacatgtgaaactatttcttctc 286  Q
      | |||||||| ||||||||||||||||| | ||||||| || |||||    
T  54545976 acactaacactacctaggagaaacctcacaggagaaactaatttttctc 54545928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 2817386 - 2817465
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacga--cctctctaaatgcaaggagagtatatttaccactctct 224  Q
    ||||||| |||||| |||||||| ||||||||||||| ||   |||||||||| ||||||||||| | | ||||||||||    
T  2817386 aagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctct 2817465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 31204893 - 31204950
Alignment:
Q  150 agtagagaactttcactaagaggaagaaattacacgacctctctaaatgcaaggagag 207  Q
    |||||||||||||||||||| || | ||||||||  ||||||||||||  ||||||||    
T  31204893 agtagagaactttcactaagtgggaaaaattacaaaacctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 43017681 - 43017582
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||||||| |||||| |||||||| | ||||||||||||||    
T  43017681 ctgatgtgaaaggatgtggacttaccacatcatatcaccttacatcggttacaaactgatgtgaaaactcatttccaactgatataaaaaatcatttctg 43017582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 16435519 - 16435616
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttc 121  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||| |||||||||| |||| |||||||    
T  16435519 ctgatgtgaaagggtgtggacttaccacatcatgacaccttacatcggtggtaagctgatgtgaaaactcatttccaactgatgtaaaaactcatttc 16435616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 6112926 - 6113025
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| ||||  ||| ||| |||||||| ||||||||||| |||| |  |||||| ||||| |  |||||||||||||||||||||| ||||||    
T  6112926 ctgatgtgaaaagatgcagacatactacatcatgacaccttacatcagttgccgcctgatgcgaaaagtgcttttcaactgatgtgaaaaatcgtttctg 6113025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 8138578 - 8138645
Alignment:
Q  142 gaggtaagagtagagaactttcactaagaggaagaaattacacgacct--ctctaaatgcaaggagag 207  Q
    |||| |||| |||||||||||||||||  ||||||||||||| |||||  |||||||| |||||||||    
T  8138578 gaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 16183755 - 16183818
Alignment:
Q  147 aagagtagagaactttcactaagaggaaga-aattacacgac--ctctctaaatgcaaggagag 207  Q
    ||||||||||||||||||||||| |||||| ||||||| |||  |||||||||| |||||||||    
T  16183755 aagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagag 16183818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 7688016 - 7687927
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| ||||    
T  7688016 ctgatgtgaaagggtgtggacttaccacatcatgacaccttacatcggtggtaaactgatgtgaaaactcattttcaactgatgtaaaaa 7687927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 28715955 - 28715818
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttaccac--tctcttataaacaggagaatatt 242  Q
    |||| |||||||||||||| ||| ||||||||||||| |||  |||||||||||||||||||||| | |||||||  | || |||||| ||||||||| |    
T  28715955 aagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaatact 28715856  T
Q  243 aacactaactaggagaaacctcacatgtgaaactattt 280  Q
    ||||||| ||||||||||||| ||| | ||||||||||    
T  28715855 aacactacctaggagaaaccttacaagagaaactattt 28715818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 5198779 - 5198920
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  5198779 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 5198878  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  5198879 aactaacacaaactaggagaaacctcacaggagaaactattt 5198920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 10379929 - 10379845
Alignment:
Q  29 gtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| || ||||||| |||| || ||| |||||||||| ||||    
T  10379929 gtgaaaggatgtggacttacgacatcatgtcactttacatcggttgccacctgatgtaaaaactcgtttccaactgatgtaaaaa 10379845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 38455718 - 38455619
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| |||||| || |||||||||||| ||||||||||| |||| || |||||| ||||| |  |||||||||||||| ||||||| ||||||    
T  38455718 ctgatgtgaaaagatgtgaacataccacatcatgacaccttacatcagttgccacctgatgcgaaaagtgcttttcaactgatgtaaaaaatcctttctg 38455619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 13804034 - 13803935
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| |||| |||| ||| |||||||| ||| ||||||| |||| || |||||| ||||| |  |||||||||||||||||||| ||||||||    
T  13804034 ctgatgtgaaaagatgcggacatactacatcatgacacgttacatcagttgccacctgatgcgaaaagtgtttttcaactgatgtgaaaaaacatttctg 13803935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 35671407 - 35671308
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||| ||| |||||  || |||||||||||| ||||||||||| |||| || |||||| ||||| |  |||||||||||||||||||||| ||||||    
T  35671407 ctgatgtaaaaagatgtaaacataccacatcatgacaccttacatcagttgccacctgatgcgaaaagtgcttttcaactgatgtgaaaaatcctttctg 35671308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 15603070 - 15602968
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaatatt 242  Q
    |||||||||||||||||||||||  |||||||||||| |||  ||||||||||||| |||| ||| | ||||||  || |||| |||| ||||||||| |    
T  15603070 aagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaatact 15602971  T
Q  243 aac 245  Q
    |||    
T  15602970 aac 15602968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 19699286 - 19699190
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcattt 120  Q
    ||||||||||| |||| |||| ||| |||||||| || |||| | | |||| || |||||| ||||| |  ||||||||||||||||||||||||||    
T  19699286 ctgatgtgaaaagatgcggacatactacatcatgacatcttagaacagttgccacctgatgcgaaaagtgcttttcaactgatgtgaaaaatcattt 19699190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 31593031 - 31593144
Alignment:
Q  146 taagagtagagaactttcactaagaggaagaaattacacgacctctctaaatgcaaggagagtatatttaccactctcttataaacaggagaatattaac 245  Q
    |||||||||||||||||||||||  | ||||||||||| ||  ||| || ||  ||| |||||||| |||||| |||||| |||| ||||||| | ||||    
T  31593031 taagagtagagaactttcactaaccgaaagaaattacaaga--tctatatatataagaagagtataattaccagtctcttgtaaataggagaacaataac 31593128  T
Q  246 actaactaggagaaac 261  Q
    |||  |||||||||||    
T  31593129 actctctaggagaaac 31593144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 8355952 - 8355853
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| ||||| ||| ||||||||||| |||| |||||||||  |  | |||||||||||| |  ||| |||||||||| |||| |||||||||    
T  8355952 ctgatgtgaaatgatgttgacataccacatcatatcactttacatcggacgctacctgatgtgaaaagtactttccaactgatgtaaaaactcatttctg 8355853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 27092636 - 27092537
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttctg 123  Q
    ||||||||||| |||| |||| ||| |||||||| ||||||| ||| |||| || |||||  ||| | |  |||||||||||| ||||||||||||||||    
T  27092636 ctgatgtgaaaagatgcggacatactacatcatgacaccttatatcagttgccacctgatacgaatagtgcttttcaactgatttgaaaaatcatttctg 27092537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 825671 - 825635
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattaca 183  Q
    ||||||||||||||||||||||| |||||||||||||    
T  825671 aagagtagagaactttcactaagtggaagaaattaca 825635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 20035703 - 20035635
Alignment:
Q  48 ccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatc 116  Q
    |||||||||| ||||||||||| |||| || |||||| ||||| |  |||||||||||||| |||||||    
T  20035703 ccacatcatgacaccttacatcagttgccacctgatgcgaaaagtgcttttcaactgatgtaaaaaatc 20035635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 830327 - 830291
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattaca 183  Q
    |||||| |||||||||||||||| |||||||||||||    
T  830327 aagagtggagaactttcactaagtggaagaaattaca 830291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 30397034 - 30397078
Alignment:
Q  148 agagtagagaacttt-cactaagaggaagaaattacacgacctct 191  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||||    
T  30397034 agagtagagaacttttcactaagtggaagaaattacaagacctct 30397078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 77987 - 77898
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| ||||    
T  77987 ctgatgtgaaagggtgtgaacttaccacatcatgacaccttacatcggtggtaaactgatgtgaaaactcattttcaactgatgtaaaaa 77898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 25149 - 25246
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaaatcatttc 121  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||| |||||||||| |||| |||||||    
T  25149 ctgatgtgaaagggtgtggacttaccacatcatgacaccttacatcggtggtaagctgatgtgaaaactcatttccaactgatgtaaaaactcatttc 25246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 6192138 - 6192227
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| ||||    
T  6192138 ctgatgtgaaaaggtgtggacttaccacatcatgacaccttacatcggtggtaaactgatgtgaaaactcattttcaactgatgtaaaaa 6192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 21872776 - 21872687
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||| |||||||||| ||||    
T  21872776 ctgatgtgaaagggtgtggacttaccacatcatgacaccttacatcggtggtaagctgatgtgaaaactcatttccaactgatgtaaaaa 21872687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 30697238 - 30697300
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgacctc--tctaaatgcaaggagag 207  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||  ||||||| |||||||||    
T  30697238 aagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 4130278 - 4130215
Alignment:
Q  147 aagagtagagaactttcactaagaggaaga-aattacacgac--ctctctaaatgcaaggagag 207  Q
    ||||||||||||||||||||||| |||||| ||||||| |||  |||||||||| |||||||||    
T  4130278 aagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 46191424 - 46191361
Alignment:
Q  147 aagagtagagaactttcactaagaggaaga-aattacacgac--ctctctaaatgcaaggagag 207  Q
    ||||||||||||||||||||||| |||||| ||||||| |||  ||||||||||  ||||||||    
T  46191424 aagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagag 46191361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 31129608 - 31129519
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    |||||| |||||| |||||||||||||||||||| ||||||||||| |||| || |||||||||||| ||||||||||||||||| ||||    
T  31129608 ctgatgggaaagggtgtggacttaccacatcatgacaccttacatcagttgccacctgatgtgaaaactcattttcaactgatgtaaaaa 31129519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 33259751 - 33259662
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgtgaaaa 113  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||| |||||||||| ||||    
T  33259751 ctgatgtgaaagggtgtggacttaccacatcatgacaccttacatcggtggtaagctgatgtgaaaactcatttccaactgatgtaaaaa 33259662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 41718603 - 41718462
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  41718603 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 41718504  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  41718503 aactaacacaaactaggagaaacctcacaggagaaactattt 41718462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Complemental strand, 41723329 - 41723188
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  41723329 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 41723230  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  41723229 aactaacacaaactaggagaaacctcacaggagaaactattt 41723188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 29585424 - 29585571
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaatatt 242  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||| ||||||| | ||||||  |||||||||||| ||||||||| |    
T  29585424 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttataaataggagaatact 29585523  T
Q  243 aac----actaactaggagaaacctcacatgtgaaactatttcttctc 286  Q
    |||    || ||||||||||||||||||| | ||||||| || |||||    
T  29585524 aactaatacaaactaggagaaacctcacaggagaaactaatttttctc 29585571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 34352441 - 34352294
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| | ||||||  |||||||||||| ||||||||       
T  34352441 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatact 34352342  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactatttcttctc 286  Q
     | |||||| |||||||||||| |||||| | ||||||| || |||||    
T  34352341 aactaacacaaactaggagaaatctcacaggagaaactaatttttctc 34352294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 34360149 - 34360002
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| | ||||||  |||||||||||| ||||||||       
T  34360149 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatact 34360050  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactatttcttctc 286  Q
     | |||||| |||||||||||| |||||| | ||||||| || |||||    
T  34360049 aactaacacaaactaggagaaatctcacaggagaaactaatttttctc 34360002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 28110241 - 28110278
Alignment:
Q  61 ccttacatcggttgtcaactgatgtgaaaaatcatttt 98  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28110241 ccttacatcggttgtcaactgatgtaaaaaatcatttt 28110278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 9439496 - 9439637
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  9439496 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 9439595  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  9439596 aactaacacaaactaggagaaacctcacaggagaaactattt 9439637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 9444216 - 9444357
Alignment:
Q  147 aagagtagagaactttcactaagaggaagaaattacacgac--ctctctaaatgcaaggagagtatatttacca--ctctcttataaacaggagaat--- 239  Q
    ||||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |  |||||  |||||||||||| ||||||||       
T  9444216 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatact 9444315  T
Q  240 -attaacactaactaggagaaacctcacatgtgaaactattt 280  Q
     | |||||| ||||||||||||||||||| | ||||||||||    
T  9444316 aactaacacaaactaggagaaacctcacaggagaaactattt 9444357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 476926 - 476842
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgt 108  Q
    ||||| ||||||| |||| ||||||||||||||| |||||||||||||| |  |||||||||||||| |||||| ||||||||||    
T  476926 ctgatatgaaagggtgtgaacttaccacatcatgacaccttacatcggtggcaaactgatgtgaaaactcatttccaactgatgt 476842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 483446 - 483362
Alignment:
Q  24 ctgatgtgaaaggatgtggacttaccacatcatgtcaccttacatcggttgtcaactgatgtgaaaaatcattttcaactgatgt 108  Q
    ||||| ||||||| |||| ||||||||||||||| |||||||||||||| |  |||||||||||||| |||||| ||||||||||    
T  483446 ctgatatgaaagggtgtgaacttaccacatcatgacaccttacatcggtggcaaactgatgtgaaaactcatttccaactgatgt 483362  T

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Target: scaffold0074 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 27350 - 27413
Alignment:
Q  147 aagagtagagaactttcactaagaggaaga-aattacacgac--ctctctaaatgcaaggagag 207  Q
    ||||||||||||||||||||||| |||||| |||||||  ||  |||||||||| |||||||||    
T  27350 aagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagag 27413  T

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