View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_28 (Length: 339)
Name: NF15449_low_28
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 983668 - 983990
Alignment:
| Q |
13 |
agatgaacacaccaagattaggtcaacatcacctggatcaacttttgccatctcaagagctttccttgctgcctctactgataaagtggtcaagttttct |
112 |
Q |
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| T |
983668 |
agatgaacacaccaagattaggtcaacatcacctggatcaacttttgccatctcaagagctttccttgctgcctctactgataaagtggtcaagttttct |
983767 |
T |
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| Q |
113 |
ccacctgcaaccaatgaatcataacactgggctatgagcaactatttgctacatctttacctaaaaccttacaagacattggatatataggtcgtctcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
983768 |
ccacctgcaaccaatgaatcataacactgggctatgagcaactatttgctacatctttacctaaaaccttacaaaacattggatatataggtcgtctcat |
983867 |
T |
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| Q |
213 |
ctatattattcaatattgacattttcatctaatatgggacttcttactcaaatttactactaggattgttaaaaaacgaaaactaaatcgaactatttta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
983868 |
ctatattattcaatattgacattttcatctaatatgggacttcttactcacatttactactaggattgttaaaaaatgaaaactaaattgaactatttta |
983967 |
T |
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| Q |
313 |
gtttagtttcagttcaaaaacaa |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
983968 |
gtttagtttcagttcaaaaacaa |
983990 |
T |
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