View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_29 (Length: 334)
Name: NF15449_low_29
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 22492630 - 22492314
Alignment:
| Q |
1 |
aacaccaatctcatcaaccattttcacacagaaatcatgaaacatagttgaaccagcacttgctactatgaatccacttccatgaaagaaaacaatgaga |
100 |
Q |
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| T |
22492630 |
aacaccaatctcatcaaccattttcacacagaaatcatgaaacatagttgaaccagcacttgctactatgaatccacttccatgaaagaaaacaatgaga |
22492531 |
T |
|
| Q |
101 |
ggtagtttgtgatgatcattagaaattggtttgttgggtaggaataatctaacccatgttttgtttgtttggttgattgtgatgtctttggtgagaactg |
200 |
Q |
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| T |
22492530 |
ggtagtttgtgatgatcattggaaattggtttgttgggtaggaataatctaacccatgttttgtttgtttggttgattgtgatgtctttggtgagaactg |
22492431 |
T |
|
| Q |
201 |
tgattggaagtgttggatcagatgaagggggagtgtatggaacttggtgtaggcgagtgattgtgttgttggaggttcgaatgatattaagatgtttgta |
300 |
Q |
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| T |
22492430 |
tgattggaagtgttggatcagatgaaggggaagtgtatggaacttggtgtaggcgagtgattgtgttgttggaggttcgaatgatattaagatgtttgta |
22492331 |
T |
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| Q |
301 |
aggatcaatggtttgag |
317 |
Q |
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||||||||||||||||| |
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| T |
22492330 |
aggatcaatggtttgag |
22492314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 22399646 - 22399585
Alignment:
| Q |
137 |
ggtaggaataatctaacccatgttttgtttgtttggttgattgtgatgtctttggtgagaac |
198 |
Q |
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||||| ||||||| || |||||||| ||||| ||||||||| |||| |||||||||||||| |
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| T |
22399646 |
ggtagaaataatcgaagccatgtttggtttgattggttgatggtgagatctttggtgagaac |
22399585 |
T |
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