View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_30 (Length: 333)
Name: NF15449_low_30
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23768767 - 23769082
Alignment:
| Q |
1 |
ggcaatggcattgattttacaaaaattttcatttgaactttctcaaacatatgctcatgctccatctgtggtgcttactgttcagccacaacatggtgct |
100 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23768767 |
ggcaatggcattgattttacagaatttttcatttgaactttctcaaacatatgctcatgctccatctgtggtgcttactgttcagccacaacatggtgct |
23768866 |
T |
|
| Q |
101 |
catgtttttctacgcaaaatcaaaacataaaaacaacatcagaaaagaaacatatacctagagcttaatggaactattaacttctatgtcatctagattt |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23768867 |
catgttattctacgcaaaatcaaaacataaaaacaacatcagagaagaaacatatacctagagcttaatggaactattaacttctatgtcatctagattt |
23768966 |
T |
|
| Q |
201 |
atctgaattttaatattcatagtgtatgtttttaatttaaatttgaataattattgtacgaccagtactttggaattagctagttcaagggcttttgacc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
23768967 |
atctgaattttaatattcatagtgtatgtttttaatttaaatttgaataattattttaaga-cagtactttggaattagctagttcaagggcttttgacc |
23769065 |
T |
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| Q |
301 |
gttggacttgttttaag |
317 |
Q |
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||||||||||||||||| |
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| T |
23769066 |
gttggacttgttttaag |
23769082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 23783315 - 23783165
Alignment:
| Q |
1 |
ggcaatggcattgattttacaaaaattttcatttgaactttctcaaacatatgctcatgctccatctgtggtgcttactgttcagccacaacatggtgct |
100 |
Q |
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||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23783315 |
ggcaatggcattgattttaaagaatttttcatttgaactttctcaaacatatgctcatgctccatctgtggtgctttctgttcagccacaacatggtgct |
23783216 |
T |
|
| Q |
101 |
catgtttttctacgcaaaatcaaaacataaaaacaacatcagaaaagaaac |
151 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23783215 |
catgttattctacgcaaaatcaaaacataaaaacaacatcagagaagaaac |
23783165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 23783163 - 23783032
Alignment:
| Q |
185 |
tatgtcatctagatttatctgaattttaatattcatagtgtatgtttttaatttaaatttgaataattattgtacgaccagtactttggaattagctagt |
284 |
Q |
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|||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||| ||| |||||||| |
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| T |
23783163 |
tatgtcatctagatttatctaaatttcattattcataatgtatgtttttaatttaaatttgaaaaattattgtaagacccttactttagaaatagctagt |
23783064 |
T |
|
| Q |
285 |
tcaagggcttttgaccgttggacttgttttaag |
317 |
Q |
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||| || ||| || ||||||||| |||||||| |
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| T |
23783063 |
ccaacgggtttgga-cgttggactagttttaag |
23783032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 30395910 - 30396032
Alignment:
| Q |
12 |
tgattttacaaaaattttcatttgaactttctcaaacatatgctcatgctccatctgtggtgcttactgttcagccacaacatggtgctcatgtttttct |
111 |
Q |
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||||||| ||| | ||||||||||||||||| ||| ||||||||||||||||| ||| ||||| ||||||||||| ||||||||||| || || | |
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| T |
30395910 |
tgattttgcaacatttttcatttgaactttcctcaacctatgctcatgctccatcaactgtgattactcttcagccacaatatggtgctcatattattat |
30396009 |
T |
|
| Q |
112 |
acgcaaaatcaaaacataaaaac |
134 |
Q |
| |
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||||||| | |||||||||||| |
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| T |
30396010 |
acgcaaagtggaaacataaaaac |
30396032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30385147 - 30385278
Alignment:
| Q |
1 |
ggcaatggcattgattttacaaaaattttcatttgaactttctcaaacatatgctcatgctccatctgtggtgcttactgttcagccacaacatggtgct |
100 |
Q |
| |
|
||||||| |||||||||| ||| | || |||||||||||||| | || ||||||||||||||||| | || ||||| ||||||||||| |||| ||| |
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| T |
30385147 |
ggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgctcatgctccatcctcgatgattactcttcagccacaatatggcgct |
30385246 |
T |
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| Q |
101 |
catgtttttctacgcaaaatcaaaacataaaa |
132 |
Q |
| |
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||| || || |||||||| | |||||||||| |
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| T |
30385247 |
catattattatacgcaaactggaaacataaaa |
30385278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30476672 - 30476735
Alignment:
| Q |
1 |
ggcaatggcattgattttacaaaaattttcatttgaactttctcaaacatatgctcatgctcca |
64 |
Q |
| |
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|||||||||| |||||||| ||||||| |||||||||||||||| | | ||||||||||||||| |
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| T |
30476672 |
ggcaatggcaatgattttaaaaaaattctcatttgaactttctccatcttatgctcatgctcca |
30476735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 8378948 - 8378819
Alignment:
| Q |
12 |
tgattttacaaaaattttcatttgaactttctcaaacatatgctcatgctccatctgtggtgcttactgttcagccacaacatggtgctcatgtttttct |
111 |
Q |
| |
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||||||||||||| || | ||||||||||||| ||| ||||||||| ||||| | | ||| | ||| |||||||| || | |||||||||||| |||| |
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| T |
8378948 |
tgattttacaaaatttctattttgaactttctccaacctatgctcatactccaaatttagtgatgactattcagccagaaaagggtgctcatgttattct |
8378849 |
T |
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| Q |
112 |
acgcaaaatcaaaacataaaaacaacatca |
141 |
Q |
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||||||| | ||| ||||||| || ||||| |
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| T |
8378848 |
acgcaaagtgaaagcataaaagcagcatca |
8378819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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