View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_low_4 (Length: 722)

Name: NF15449_low_4
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_low_4
NF15449_low_4
[»] chr1 (14 HSPs)
chr1 (20-275)||(5485651-5485904)
chr1 (393-554)||(5486022-5486181)
chr1 (652-710)||(5486267-5486325)
chr1 (393-450)||(35136970-35137027)
chr1 (394-453)||(40316829-40316888)
chr1 (394-452)||(36577298-36577356)
chr1 (393-461)||(6143809-6143877)
chr1 (393-453)||(29154904-29154964)
chr1 (394-450)||(52362609-52362665)
chr1 (420-450)||(8447889-8447919)
chr1 (394-456)||(38713697-38713759)
chr1 (393-451)||(50328028-50328086)
chr1 (393-450)||(47721535-47721592)
chr1 (393-450)||(47728527-47728584)
[»] chr6 (4 HSPs)
chr6 (393-452)||(754324-754383)
chr6 (393-455)||(6531063-6531125)
chr6 (393-450)||(3832589-3832646)
chr6 (393-450)||(13143270-13143327)
[»] chr2 (16 HSPs)
chr2 (393-451)||(41586555-41586613)
chr2 (393-450)||(36643972-36644029)
chr2 (394-446)||(1415930-1415982)
chr2 (393-453)||(23352792-23352852)
chr2 (393-453)||(32869952-32870012)
chr2 (394-453)||(6170757-6170816)
chr2 (393-452)||(9634322-9634381)
chr2 (395-453)||(3012737-3012795)
chr2 (394-452)||(24562903-24562961)
chr2 (394-455)||(6998951-6999012)
chr2 (393-454)||(13765526-13765587)
chr2 (394-453)||(2563831-2563890)
chr2 (393-452)||(7574561-7574620)
chr2 (393-447)||(13347705-13347759)
chr2 (393-451)||(40936951-40937009)
chr2 (393-446)||(35705619-35705672)
[»] chr8 (5 HSPs)
chr8 (393-449)||(37597364-37597420)
chr8 (393-449)||(45508659-45508715)
chr8 (393-452)||(4658140-4658199)
chr8 (393-452)||(36885374-36885433)
chr8 (394-451)||(42569616-42569673)
[»] chr3 (10 HSPs)
chr3 (393-453)||(41281606-41281666)
chr3 (393-452)||(6999296-6999355)
chr3 (393-452)||(37411001-37411060)
chr3 (394-452)||(55400126-55400184)
chr3 (413-453)||(3953360-3953400)
chr3 (394-450)||(49761434-49761490)
chr3 (393-453)||(50206855-50206915)
chr3 (393-453)||(51465799-51465859)
chr3 (393-451)||(46019588-46019646)
chr3 (393-450)||(3281604-3281661)
[»] chr4 (9 HSPs)
chr4 (393-451)||(2999238-2999296)
chr4 (393-453)||(17683467-17683527)
chr4 (393-453)||(46405859-46405919)
chr4 (398-462)||(54974602-54974665)
chr4 (398-453)||(32696673-32696728)
chr4 (395-454)||(51887791-51887849)
chr4 (393-451)||(22819775-22819833)
chr4 (394-452)||(38338808-38338866)
chr4 (393-454)||(31657772-31657833)
[»] chr7 (6 HSPs)
chr7 (393-446)||(21822491-21822544)
chr7 (393-450)||(41894041-41894098)
chr7 (394-451)||(43573430-43573487)
chr7 (393-453)||(11352859-11352919)
chr7 (393-451)||(7817762-7817820)
chr7 (394-451)||(41458723-41458780)
[»] chr5 (7 HSPs)
chr5 (393-450)||(15478784-15478841)
chr5 (393-450)||(34124747-34124804)
chr5 (413-453)||(189519-189559)
chr5 (394-453)||(189588-189647)
chr5 (393-452)||(41175592-41175651)
chr5 (393-451)||(43441864-43441922)
chr5 (393-450)||(8675321-8675378)
[»] scaffold0136 (1 HSPs)
scaffold0136 (393-453)||(38551-38611)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 5485651 - 5485904
Alignment:
Q  20 gaaatttgtatgaatatatttaaaagcaaaatcagctccaagaaaagtagtaggatttaacgaaaatatagaagaaaattggtaaaattaagtggtccat 119  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5485651 gaaatttgtatgtatatatttaaaagcaaaatctgctccaagaaaagtcgtaggatttaacaaaaatatagaagaaaattggtaaaattaagtggtccat 5485750  T
Q  120 cttatgttttcttttcaaaatcgagaaacagaatcattgtgagacccacaagatgttttctattttccttcactttttaaatatggaacactaaataata 219  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5485751 cttatgttttcttttcaaaatcgagaaaaagaatcattgtgagacccacaagatgttttctattttccttcactttataaatatggaacactaaataata 5485850  T
Q  220 ggnnnnnnnnnttggtgtgttgtctttctcttgtgcgcttttatatatgaaaaatg 275  Q
    |          ||||||||||||||||||||||||||||||||||||||| |||||    
T  5485851 g--aaaaaaaattggtgtgttgtctttctcttgtgcgcttttatatatgagaaatg 5485904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 393 - 554
Target Start/End: Original strand, 5486022 - 5486181
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctttatatatatactttctcttctccaaacgggtgtagtgtat 492  Q
    |||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||  |    
T  5486022 gtaaattatggttgttttataagttgtcaagtaaatgattgttcaaataacactccgctttatatatatattttctcttctccaaacgggtgtagtg--t 5486119  T
Q  493 atatattcaagcaaatgggggtgtaatagcattgtgacatcataaataaattaaaattaaac 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5486120 atatattcaagcaaatgggggtgtaatagcattgtgacatcataaataaattaaaattaaac 5486181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 652 - 710
Target Start/End: Original strand, 5486267 - 5486325
Alignment:
Q  652 tctaggggtatacaacacaatcaagcgcacccgcatacatatcttaatccagaataatc 710  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  5486267 tctagaggtatacaacacaatcaagcgcacccgcatacagatcttaatccagagtaatc 5486325  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 35136970 - 35137027
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||| ||| |||||| |||| ||||||||||||||||||||||||||    
T  35136970 gtaaattatggttgtcctaaaaattgtcaaccaaatgattgttcaaataacactcctc 35137027  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 394 - 453
Target Start/End: Complemental strand, 40316888 - 40316829
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    |||||||||||||| ||| || ||| |||| ||||| |||||||||||||||||||||||    
T  40316888 taaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 40316829  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 36577356 - 36577298
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    |||||||||||||| ||| || ||| |||| ||||| ||||||||||||||||||||||    
T  36577356 taaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcctctt 36577298  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 461
Target Start/End: Original strand, 6143809 - 6143877
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctttatatatat 461  Q
    |||||||||||||||  || |  ||| |||| |||||||||||||||||||| ||||||||||| ||||    
T  6143809 gtaaattatggttgtcttaaatgttgtcaaccaaatgattgttcaaataacaatcctctttataaatat 6143877  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 29154904 - 29154964
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||| ||||| | |||| ||| |||| ||||| |||||||||||||||||||||||    
T  29154904 gtaaattatcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 29154964  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 52362609 - 52362665
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    |||||||||||||| ||| || ||| |||| ||||| ||||||||||||||||||||    
T  52362609 taaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcctc 52362665  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 420 - 450
Target Start/End: Original strand, 8447889 - 8447919
Alignment:
Q  420 caactaaatgattgttcaaataacactcctc 450  Q
    |||||||||||||||||||||||||||||||    
T  8447889 caactaaatgattgttcaaataacactcctc 8447919  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 38713697 - 38713759
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctttata 456  Q
    ||||||||| ||||  ||||| ||| || |||||||||| ||||||||||||| |||||||||    
T  38713697 taaattatgattgtcatataagttgtcagctaaatgatttttcaaataacacttctctttata 38713759  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 50328086 - 50328028
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    ||||||||||||||| | | || ||| |||| ||||| |||||||||||||||||||||    
T  50328086 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 50328028  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 47721535 - 47721592
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||| | |||| ||| | |||||||| ||||| ||||||||||||||    
T  47721535 gtaaattatggttgtcccataagttgtccactaaatggttgtttaaataacactcctc 47721592  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 47728527 - 47728584
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||| | |||| ||| | |||||||| ||||| ||||||||||||||    
T  47728527 gtaaattatggttgtcccataagttgtccactaaatggttgtttaaataacactcctc 47728584  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 754383 - 754324
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    ||||||||||||||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  754383 gtaaattatggttgttccaaaaattgtcaaccaaatggttgttcaaataacactcctctt 754324  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 6531125 - 6531063
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctttat 455  Q
    ||||||||||||||| | || | ||  |||| ||||| |||||||||||||||||||||||||    
T  6531125 gtaaattatggttgtcccattagttatcaaccaaatggttgttcaaataacactcctctttat 6531063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 3832589 - 3832646
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||| | |||| ||| |||  ||||| ||||||||||||||||||||    
T  3832589 gtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcctc 3832646  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 13143327 - 13143270
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||| | | || ||| |||| ||||| ||||||||||||||||||||    
T  13143327 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctc 13143270  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 41586613 - 41586555
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    ||||||||||||||||| |||| ||| |||||||||| |||||||||||||||| ||||    
T  41586613 gtaaattatggttgttccataagttgtcaactaaatggttgttcaaataacacttctct 41586555  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 36644029 - 36643972
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||| | |||||||| |||| ||||| ||||||||||||||||||||    
T  36644029 gtaaattatggttgtcccataaattgtcaaccaaatggttgttcaaataacactcctc 36643972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 1415982 - 1415930
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacact 446  Q
    |||||||||||||| |||||||||  ||||||||| |||||||||||||||||    
T  1415982 taaattatggttgtcctataaattatcaactaaataattgttcaaataacact 1415930  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 23352852 - 23352792
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||||| | |||| ||| |||| ||||| |||||||||||||||||||||||    
T  23352852 gtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 23352792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 32869952 - 32870012
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||||| | | |||||| |||| ||||| |||||||||||||||||||||||    
T  32869952 gtaaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaataacactcctcttt 32870012  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 6170757 - 6170816
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    |||||||||||||| ||| || ||| |||| ||||| |||||||||||||||||||||||    
T  6170757 taaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 6170816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 9634381 - 9634322
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    ||||||||||||||||| | || ||| |||| |||||||||||||||||||||| |||||    
T  9634381 gtaaattatggttgttcaaaaagttgtcaaccaaatgattgttcaaataacacttctctt 9634322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 3012795 - 3012737
Alignment:
Q  395 aaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||| | |||| ||| |||| ||||| |||||||||||||||||||||||    
T  3012795 aaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctcttt 3012737  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 24562961 - 24562903
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    |||||||||||||| ||| || ||| |||| ||||| ||||||||||||||||||||||    
T  24562961 taaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcctctt 24562903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 6999012 - 6998951
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctttat 455  Q
    |||||||||||||| ||| || ||| |||| ||||| ||||| |||||||||||||||||||    
T  6999012 taaattatggttgtcctaaaagttgtcaaccaaatggttgtttaaataacactcctctttat 6998951  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 13765526 - 13765587
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttta 454  Q
    ||||||||||||||| | | || ||| |||| ||||| ||||||||||||||||||||||||    
T  13765526 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttta 13765587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 2563831 - 2563890
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||| |||| ||| || ||| |||| ||||||||||||||||||||||| |||||    
T  2563831 taaattatgattgtcctaaaagttgtcaaccaaatgattgttcaaataacactcatcttt 2563890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 7574561 - 7574620
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    ||||||||| ||||||| | |||||| |||| ||||| |||||||||||||||| |||||    
T  7574561 gtaaattatagttgttccaaaaattgtcaaccaaatggttgttcaaataacacttctctt 7574620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 447
Target Start/End: Complemental strand, 13347759 - 13347705
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactc 447  Q
    ||||||||||||||| | | |||||| |||| ||||| |||||||||||||||||    
T  13347759 gtaaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaataacactc 13347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 451
Target Start/End: Complemental strand, 40937009 - 40936951
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    |||||||||||||||   |||||||| || ||||||| || ||||||||||||||||||    
T  40937009 gtaaattatggttgtcacataaattgtcagctaaatggttattcaaataacactcctct 40936951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 35705619 - 35705672
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacact 446  Q
    ||||||||||||||||  |||||||| || | || |||||||||||||||||||    
T  35705619 gtaaattatggttgttaaataaattgtcaccaaattgattgttcaaataacact 35705672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 37597364 - 37597420
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcct 449  Q
    |||||||||||||||  ||||| ||| |||||| |||||||||||||||||||||||    
T  37597364 gtaaattatggttgtcttataagttgtcaactatatgattgttcaaataacactcct 37597420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 45508659 - 45508715
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcct 449  Q
    ||||||||||||||| | |||||||  |||||||||  |||||||||||||||||||    
T  45508659 gtaaattatggttgtcccataaattatcaactaaattgttgttcaaataacactcct 45508715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 4658199 - 4658140
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    ||||||||||||||| ||| || ||| ||| |||||| ||||||||||||||||| ||||    
T  4658199 gtaaattatggttgtcctaaaagttgtcaattaaatggttgttcaaataacactcatctt 4658140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 36885433 - 36885374
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    ||||||||||||||| | |||| ||| | || ||||| ||||||||||||||||||||||    
T  36885433 gtaaattatggttgtcccataagttgtccaccaaatggttgttcaaataacactcctctt 36885374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 42569673 - 42569616
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    |||||||||||||| ||| |||||  |||| ||||| |||||||||||| ||||||||    
T  42569673 taaattatggttgtcctaaaaattatcaaccaaatggttgttcaaataatactcctct 42569616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 41281666 - 41281606
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||| | ||||||| |||| ||| |||| |||||||||||||||||||||||||||||    
T  41281666 gtaaattttagttgttccataagttgtcaaccaaatgattgttcaaataacactcctcttt 41281606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 6999296 - 6999355
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    ||||||||||||||| | |||| ||| |||| ||||| ||||||||||||||||||||||    
T  6999296 gtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcctctt 6999355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 393 - 452
Target Start/End: Original strand, 37411001 - 37411060
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    ||||||||||||||||  |||  ||| |||||||||| ||||||||||||||||||||||    
T  37411001 gtaaattatggttgtttcataggttgtcaactaaatggttgttcaaataacactcctctt 37411060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 452
Target Start/End: Original strand, 55400126 - 55400184
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    |||||||||||||| ||| || ||| |||| ||||| ||||||||||||||||||||||    
T  55400126 taaattatggttgtcctaaaagttgtcaaccaaatggttgttcaaataacactcctctt 55400184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 3953400 - 3953360
Alignment:
Q  413 aaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  3953400 aaattgtcaaccaaatgattgttcaaataacactcctcttt 3953360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 49761434 - 49761490
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||| ||||  | ||| ||| |||||||||||||||||||||||||||||||    
T  49761434 taaattatgattgtcatgtaagttgtcaactaaatgattgttcaaataacactcctc 49761490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 50206915 - 50206855
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||||| ||| || ||| |||||||||  ||||| |||||||||||||||||    
T  50206915 gtaaattatggttgtcctaaaagttgtcaactaaatagttgtttaaataacactcctcttt 50206855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 51465859 - 51465799
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||||| | | || ||| |||| ||||| |||||||||||||||||||||||    
T  51465859 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 51465799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 46019588 - 46019646
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    ||||||||||||||||| | || ||| |||| ||||| |||||||||||||||| ||||    
T  46019588 gtaaattatggttgttccaaaagttgtcaaccaaatggttgttcaaataacactactct 46019646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 3281661 - 3281604
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    |||||||||||||||  | ||| ||| |||| ||||| ||||||||||||||||||||    
T  3281661 gtaaattatggttgtcatgtaagttgacaaccaaatggttgttcaaataacactcctc 3281604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 2999238 - 2999296
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    ||||||||||||||| ||| || ||| ||| |||||| |||||||||||||||||||||    
T  2999238 gtaaattatggttgtcctaaaagttgtcaattaaatggttgttcaaataacactcctct 2999296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 17683467 - 17683527
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||||| | | || ||| |||| ||||| |||||||||||||||||||||||    
T  17683467 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 17683527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 46405919 - 46405859
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||||| | | |||||  |||| ||||||||||||||||||||||| |||||    
T  46405919 gtaaattatggttgtccaaaaaattatcaaccaaatgattgttcaaataacactcatcttt 46405859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 54974602 - 54974665
Alignment:
Q  398 ttatggttgttctataaattgccaactaaatgattgttcaaataacactcctctttatatatata 462  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||||  |||||| ||||||||    
T  54974602 ttatggttgttctaaaaattgtcatataaatgattgttcaaataacacatctcttt-tatatata 54974665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 453
Target Start/End: Complemental strand, 32696728 - 32696673
Alignment:
Q  398 ttatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    |||||||||| | |||||||| |||| ||||| ||||||||||||||| |||||||    
T  32696728 ttatggttgtacaataaattgtcaaccaaatggttgttcaaataacacacctcttt 32696673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 454
Target Start/End: Original strand, 51887791 - 51887849
Alignment:
Q  395 aaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttta 454  Q
    ||||||||||||| |||||| ||| ||| |||| | ||||||||||||||||||||||||    
T  51887791 aaattatggttgtcctataagttgtcaattaaagg-ttgttcaaataacactcctcttta 51887849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 22819775 - 22819833
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    ||||||||||||||| | | || ||| |||| ||||| |||||||||||||||||||||    
T  22819775 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctct 22819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 38338866 - 38338808
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    |||||||||||||||| | |||||  |||| |||||||||||| ||||| |||||||||    
T  38338866 taaattatggttgttccaaaaattatcaaccaaatgattgttcgaataatactcctctt 38338808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 31657772 - 31657833
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttta 454  Q
    |||||| |||||||| | | |||||| |||| ||||| ||||| ||||||||||||||||||    
T  31657772 gtaaatgatggttgtcccaaaaattgtcaaccaaatggttgtttaaataacactcctcttta 31657833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 21822544 - 21822491
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacact 446  Q
    |||||||||||||||| || || ||| |||||||||| ||||||||||||||||    
T  21822544 gtaaattatggttgttttaaaagttgtcaactaaatggttgttcaaataacact 21822491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 41894041 - 41894098
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    |||||||||||||||   | |||||| |||||||||| ||||||||||||||||||||    
T  41894041 gtaaattatggttgtcacaaaaattgtcaactaaatggttgttcaaataacactcctc 41894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 43573487 - 43573430
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    ||||||||||||||   | |||||| |||| |||||||||||||||||||||||||||    
T  43573487 taaattatggttgtctcaaaaattgtcaaccaaatgattgttcaaataacactcctct 43573430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 11352919 - 11352859
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||||||||| | | || ||| |||| ||||| |||||||||||||||||||||||    
T  11352919 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctcttt 11352859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 7817762 - 7817820
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    |||||||||||||||   |||| ||| |||| ||||| |||||||||||||||||||||    
T  7817762 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctct 7817820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 41458723 - 41458780
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    ||||||||||||||  | ||| ||| |||| ||||| |||||||||||||||||||||    
T  41458723 taaattatggttgtcatgtaagttgtcaaccaaatggttgttcaaataacactcctct 41458780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 15478784 - 15478841
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||||| | |||||| |||| ||||  ||||||||||||||||||||    
T  15478784 gtaaattatggttgttccaaaaattgtcaaccaaatagttgttcaaataacactcctc 15478841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 34124747 - 34124804
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    |||||||||||||||  || |||||| ||| |||||| ||||||||||||||||||||    
T  34124747 gtaaattatggttgtcttaaaaattgtcaattaaatggttgttcaaataacactcctc 34124804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 189559 - 189519
Alignment:
Q  413 aaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  189559 aaattgtcaaccaaatgattgttcaaataacactcctcttt 189519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 453
Target Start/End: Complemental strand, 189647 - 189588
Alignment:
Q  394 taaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||| |||| | | || ||| |||| |||||||||||||||||||||||||||||    
T  189647 taaattatgattgtcccaaaagttgtcaaccaaatgattgttcaaataacactcctcttt 189588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 452
Target Start/End: Complemental strand, 41175651 - 41175592
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctctt 452  Q
    |||||||||||||||   |||| ||| |||| ||||| ||||||||||||||||||||||    
T  41175651 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcctctt 41175592  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 43441864 - 43441922
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctct 451  Q
    |||||||||||||||  || || ||| |||| ||||| |||||||||||||||||||||    
T  43441864 gtaaattatggttgtcttaaaagttgtcaaccaaatggttgttcaaataacactcctct 43441922  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 8675378 - 8675321
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctc 450  Q
    ||||||||||||||| | | || ||| |||| ||||| ||||||||||||||||||||    
T  8675378 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcctc 8675321  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 38551 - 38611
Alignment:
Q  393 gtaaattatggttgttctataaattgccaactaaatgattgttcaaataacactcctcttt 453  Q
    ||||||||| ||||| | | || ||| |||||||||| |||||||||||||||||||||||    
T  38551 gtaaattatagttgtcccaaaagttgtcaactaaatggttgttcaaataacactcctcttt 38611  T

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