View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_43 (Length: 281)
Name: NF15449_low_43
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3041945 - 3041671
Alignment:
| Q |
1 |
tcatgtaactaaccctctcctttggtactataatttattgcaaagagacccctcaatcaagcaaatcacatggcatgttccacaagtcatctaatcaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3041945 |
tcatgtaactaaccctctcctttggtactataatttattgcaaagagacccctcaatcaagcaaatcacatggcatgttccacaagtcatctaatcaaac |
3041846 |
T |
|
| Q |
101 |
ggccaagatcaaatcttaaaatatcacaaggaagcataaatcgttcgatatgtcccatatccaacttattatggtgctggcttctgttgggggttttggg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3041845 |
ggccaagatcaaatcttaaaatatcacaaggaagcataaatcgttcgatatgtcccatatccaacttattatggtgctggcttctgttgggggttttggg |
3041746 |
T |
|
| Q |
201 |
aggagacaacttttgtccccacaattgtttctcatgtgaccgaccatttcctcttacttgacctgtctctgctcc |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3041745 |
aggagacaacttttgtccccacaattgtttctcatgtgaccgaccatttcctcttacttgacctgtctttgctcc |
3041671 |
T |
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