View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_low_46 (Length: 272)
Name: NF15449_low_46
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 43651137 - 43651377
Alignment:
| Q |
18 |
atataagacatcgtagattaatgaatgtcattgagatcatgatacgtaacgtaatccctatatgatactgatagagcaaaccactccaacaaattgttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43651137 |
atataagacatcgtagattaatgaatgtcattgagatcatgatacataacgtaatccctatatgatactgatagagcaa-ccactccaacaaattgttca |
43651235 |
T |
|
| Q |
118 |
catgtccaaaattctaattgtatcaagtaattagatagaatcaaaacaagtgtttggtgtatactatttccttcttaagaaaaattagtaacacatttgt |
217 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43651236 |
catgttcaaaattctaattgtatcaagtaattagatagaatcaaaacaagtgtttggtgtatactatttccttcttaagaaaaattagtaacacatttgt |
43651335 |
T |
|
| Q |
218 |
ggaaatgctaattttgcatgtgttcattattaactaatgttc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43651336 |
ggaaatgctaattttgcatgtgttcattattaactaatgttc |
43651377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University