View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_49 (Length: 255)
Name: NF15449_low_49
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 15998539 - 15998353
Alignment:
| Q |
13 |
gaagaatatgactatgatcaatggggggctttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagatatgaacgatttgctt |
112 |
Q |
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| T |
15998539 |
gaagtatatgactatgatcaatggggtgctttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagatatgaacgatttgctt |
15998440 |
T |
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| Q |
113 |
ccatttttgaaacaggtgagaatgattaagcagagaaaactcttcttccaatgtttgctataggtctatttaatgctttacagatac |
199 |
Q |
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| T |
15998439 |
ccatttttgaaacaggtgagaatgattaagcagagaaaactcttcttccaatgtttgctataggtctatttaatgctttacagatac |
15998353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 15998208 - 15998165
Alignment:
| Q |
197 |
tacatgttgttttagatttgaatggctgccatctagtgtctttt |
240 |
Q |
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| T |
15998208 |
tacatgttgttttagatttgaatggctgccatctagtgtctttt |
15998165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 14651587 - 14651641
Alignment:
| Q |
44 |
tgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagata |
98 |
Q |
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| T |
14651587 |
tgtaaagagggtttgtttgaagaagcgtttgttttgctgtcaaaaatggaagata |
14651641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 14661378 - 14661432
Alignment:
| Q |
44 |
tgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaagata |
98 |
Q |
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| T |
14661378 |
tgtaaagagggtttgtttgaagaagcgtttgttttgctgtcaaaaatggaagata |
14661432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 17251580 - 17251638
Alignment:
| Q |
38 |
gggctttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaaga |
96 |
Q |
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| T |
17251580 |
gggctttgtaaagagagcttgtttgatgaagcattgaccttgctgtcaaaaatggaaga |
17251638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 29949625 - 29949571
Alignment:
| Q |
42 |
tttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaaga |
96 |
Q |
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| T |
29949625 |
tttgtaaagaaggtttatttgacgaggcattgtccttactgtcaaaaatggaaga |
29949571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 29953422 - 29953368
Alignment:
| Q |
42 |
tttgtaaagagggtttatttgaagaagcattttacttgctgtcaaaaatggaaga |
96 |
Q |
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| T |
29953422 |
tttgtaaagaaggtttatttgacgaggcattgtccttactgtcaaaaatggaaga |
29953368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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