View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_53 (Length: 250)
Name: NF15449_low_53
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 42217910 - 42217682
Alignment:
| Q |
4 |
gaaaatatcatcaaggattatttagaacttatttaacttatctggtacataagtatttatattacatgtgatatttcactgaactgttttgagcttattt |
103 |
Q |
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| T |
42217910 |
gaaaatatcatcaaggattatttagaacttattgaacttatctggtacataagtatttatattacatgtgatatttcactgaactgttttgagcttattt |
42217811 |
T |
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| Q |
104 |
taataacccgtgcaaccgttttatgaataagcacgtaattaagctcatgaattagaatcgatgttgttaaatagcagctatacggtgctactacactatt |
203 |
Q |
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| T |
42217810 |
ttataagccgtccaaccgttttatgaataagcatgtaattaagctcatgaattagaatcgatgttgttaaatagcagctatacggtgctactacactatt |
42217711 |
T |
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| Q |
204 |
gcatagtggaatttgaacaaatcactgtc |
232 |
Q |
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| T |
42217710 |
gcatagtggaatttgaacaaatcactgtc |
42217682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 42185915 - 42185690
Alignment:
| Q |
4 |
gaaaatatcatcaaggattatttagaacttatttaacttatctggtacataagta-tttatattacatgtgatatttcactgaactgttttgagcttatt |
102 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||| | |||||||||| | ||||| |
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| T |
42185915 |
gaaaatatcatcaaggattatttagaacttattgaacttatctggtacataagtattttatattgca--tgatatttcaataaactgttttgggattatt |
42185818 |
T |
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| Q |
103 |
ttaataacccgtgc-aaccgttttatgaataagcacgtaattaagctcatgaattagaatcgatgttgttaaatagcagctatacggtgctactacacta |
201 |
Q |
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| T |
42185817 |
ttaataagccttccaaatacttttatgaacaagtacgaaattaatctcattaattagaatcaatgttgttaaatagtgactttggggtgctactacgcta |
42185718 |
T |
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| Q |
202 |
ttgcatagtggaatttgaacaaatcact |
229 |
Q |
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| T |
42185717 |
tcgcatagtggaatttgaacaattcact |
42185690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 43935226 - 43935198
Alignment:
| Q |
197 |
cactattgcatagtggaatttgaacaaat |
225 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43935226 |
cactattgcatagtggaatttgaacaaat |
43935198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 29165827 - 29165855
Alignment:
| Q |
197 |
cactattgcatagtggaatttgaacaaat |
225 |
Q |
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| T |
29165827 |
cactattgcatagtggaatttgaacaaat |
29165855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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