View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_low_54 (Length: 250)

Name: NF15449_low_54
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_low_54
NF15449_low_54
[»] chr6 (7 HSPs)
chr6 (1-242)||(33481675-33481918)
chr6 (4-80)||(3066417-3066494)
chr6 (17-79)||(33051359-33051422)
chr6 (16-81)||(19121443-19121509)
chr6 (18-82)||(8976996-8977061)
chr6 (13-66)||(27447203-27447256)
chr6 (28-64)||(22681922-22681958)
[»] chr4 (1 HSPs)
chr4 (4-81)||(19462988-19463065)
[»] chr1 (3 HSPs)
chr1 (1-90)||(2953296-2953384)
chr1 (14-79)||(42773296-42773362)
chr1 (14-66)||(28237350-28237402)
[»] chr7 (5 HSPs)
chr7 (1-64)||(35858814-35858877)
chr7 (32-81)||(39704318-39704368)
chr7 (16-74)||(7448981-7449040)
chr7 (14-79)||(39445822-39445888)
chr7 (13-80)||(13764926-13764994)
[»] chr8 (2 HSPs)
chr8 (14-74)||(9374612-9374673)
chr8 (11-51)||(27428256-27428296)
[»] chr5 (2 HSPs)
chr5 (14-74)||(29656066-29656127)
chr5 (1-66)||(31941068-31941133)
[»] chr3 (4 HSPs)
chr3 (10-79)||(38611608-38611677)
chr3 (28-79)||(11396751-11396803)
chr3 (13-63)||(52134621-52134671)
chr3 (16-79)||(13867399-13867463)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-66)||(40102-40155)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33481918 - 33481675
Alignment:
Q  1 aacaaacgagcgtcatattgcaacatgttaacttctccattg-tttatgacctgggaggtagcacgg-taaaagttttagtatgtcaataatgttgaaat 98  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  33481918 aacaaacgagcgtcatattgcaacatgttaacttctccattggtttatgacctgggcggtagcacgggtaaaagttttaatatgtcaataatgttgaaat 33481819  T
Q  99 gcattgatttgtatgctgggatatttggtgtgggtgcatcgatctaaccgacctttgtaaaattaaacagcaagttctagcttatttacagaaaagacaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33481818 gcattgatttgtatgctgggatatttggtgtgggtgcatcgatctaaccgacctttgtaaaattaaacagcaagttctagcttatttacagaaaagacaa 33481719  T
Q  199 tgataaacaacttgtttacttaattctttatttcatcctatgat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33481718 tgataaacaacttgtttacttaattctttatttcatcctatgat 33481675  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 3066417 - 3066494
Alignment:
Q  4 aaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagta 80  Q
    ||||| |||||||||| |||||| ||| ||||||||||||||||||||  || |||||||| |||||||||| |||||    
T  3066417 aaacgggcgtcatattacaacatattaccttctccattgtttatgacccaggcggtagcacgggtaaaagttctagta 3066494  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 33051422 - 33051359
Alignment:
Q  17 attgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg-taaaagttttagt 79  Q
    |||||||||| ||| |||||||||||||||||||| ||| |||||||||| |||||||| ||||    
T  33051422 attgcaacatattaccttctccattgtttatgacccgggcggtagcacggataaaagttctagt 33051359  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 19121443 - 19121509
Alignment:
Q  16 tattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagtat 81  Q
    |||||||| || |||||||||||||||| ||||||| ||  |||||||| |||||||||| ||||||    
T  19121443 tattgcaatatattaacttctccattgtctatgacccggacggtagcacgggtaaaagttctagtat 19121509  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 8976996 - 8977061
Alignment:
Q  18 ttgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagtatg 82  Q
    |||||| || ||| ||| |||||||||||||||| ||| |||||||| |||||||||| |||||||    
T  8976996 ttgcaatatattagcttttccattgtttatgacccgggcggtagcacgggtaaaagttctagtatg 8977061  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27447203 - 27447256
Alignment:
Q  13 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 66  Q
    |||||||| || |||||| ||| |||||||||||||||| ||| ||||||||||    
T  27447203 tcatattgtaatatgttagcttttccattgtttatgacccgggcggtagcacgg 27447256  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 22681922 - 22681958
Alignment:
Q  28 ttaacttctccattgtttatgacctgggaggtagcac 64  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  22681922 ttaacttttccattgtttatgacctgggcggtagcac 22681958  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 19462988 - 19463065
Alignment:
Q  4 aaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacggtaaaagttttagtat 81  Q
    ||||| |||||||||| |||||| ||| |||||||| ||||||||||||||| ||||||||||||||| || ||||||    
T  19462988 aaacgggcgtcatattacaacatattagcttctccactgtttatgacctgggcggtagcacggtaaaaattctagtat 19463065  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2953296 - 2953384
Alignment:
Q  1 aacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacggtaaaagttttagtatgtcaataat 90  Q
    |||||| | |||||||||| |||||| ||| |||||||||||||||||||  ||| |||| ||||| ||||||| ||||| |||||||||    
T  2953296 aacaaaagggcgtcatattacaacatattagcttctccattgtttatgactcgggcggtatcacgggaaaagttctagta-gtcaataat 2953384  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 42773296 - 42773362
Alignment:
Q  14 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagt 79  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| |||||||| |||||||||| ||||    
T  42773296 catattgcaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagttctagt 42773362  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 28237402 - 28237350
Alignment:
Q  14 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 66  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| ||||||||||    
T  28237402 catattgcaacatattaccttctcctttgtttatgacccgggtggtagcacgg 28237350  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35858814 - 35858877
Alignment:
Q  1 aacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcac 64  Q
    |||||| | ||||||| ||||||||||||||||| |||||||||||||||| ||  ||||||||    
T  35858814 aacaaatgggcgtcatgttgcaacatgttaacttttccattgtttatgacccggacggtagcac 35858877  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 39704368 - 39704318
Alignment:
Q  32 cttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagtat 81  Q
    |||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  39704368 cttctccattgtttatgacctgggcggtagcacgggtaaaagttatagtat 39704318  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 7449040 - 7448981
Alignment:
Q  16 tattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg-taaaagtt 74  Q
    |||||||| || |||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  7449040 tattgcaatatattaacttctccattgtttatgactcgggcggtagcacggataaaagtt 7448981  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 39445822 - 39445888
Alignment:
Q  14 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagt 79  Q
    |||||| |||||| ||| ||||||| |||||||||||| ||| |||||||| |||||||||| ||||    
T  39445822 catattacaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagttctagt 39445888  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 13764926 - 13764994
Alignment:
Q  13 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagta 80  Q
    ||||||||||| || ||| ||| |||||||||||||||  ||| |||||||| |||||||||| |||||    
T  13764926 tcatattgcaatatattagcttttccattgtttatgactcgggcggtagcacgggtaaaagttctagta 13764994  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 9374673 - 9374612
Alignment:
Q  14 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg-taaaagtt 74  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| |||||||||| ||||||||    
T  9374673 catattgcaacatattaccttctcctttgtttatgacccgggcggtagcacggataaaagtt 9374612  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 27428296 - 27428256
Alignment:
Q  11 cgtcatattgcaacatgttaacttctccattgtttatgacc 51  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  27428296 cgtcatattgtaacatataaacttctccattgtttatgacc 27428256  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 29656127 - 29656066
Alignment:
Q  14 catattgcaacatgttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagtt 74  Q
    ||||||||||||| ||| ||||||| |||||||||||| ||| |||||||| ||||||||||    
T  29656127 catattgcaacatattaccttctcctttgtttatgacccgggcggtagcacgggtaaaagtt 29656066  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31941133 - 31941068
Alignment:
Q  1 aacaaacgagcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 66  Q
    |||||||| || | |||||||||||| ||| ||||||||||||||||||||| || | ||||||||    
T  31941133 aacaaacgggcattatattgcaacatattagcttctccattgtttatgacctaggcgatagcacgg 31941068  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 38611677 - 38611608
Alignment:
Q  10 gcgtcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacggtaaaagttttagt 79  Q
    |||||||||| |||||| ||| |||||||||||||||||||  ||| |||| ||||| ||||||| ||||    
T  38611677 gcgtcatattacaacatattagcttctccattgtttatgactcgggcggtatcacgggaaaagttctagt 38611608  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 11396751 - 11396803
Alignment:
Q  28 ttaacttctccattgtttatgacctgggaggtagcac-ggtaaaagttttagt 79  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||| ||||    
T  11396751 ttaacttctccattgtttatgacccgggcggtagcacgggtaaaagttctagt 11396803  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 52134621 - 52134671
Alignment:
Q  13 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagca 63  Q
    ||||||||||| || ||| |||||||||||||||||||| ||| |||||||    
T  52134621 tcatattgcaatatattagcttctccattgtttatgacccgggcggtagca 52134671  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 13867463 - 13867399
Alignment:
Q  16 tattgcaacatgttaacttctccattgtttatgacctgggaggtagcacg-gtaaaagttttagt 79  Q
    |||||||| || ||| |||||||||||||||||||| | | ||||||||| ||||||||| ||||    
T  13867463 tattgcaatatattagcttctccattgtttatgacccgagcggtagcacgagtaaaagttctagt 13867399  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 40155 - 40102
Alignment:
Q  13 tcatattgcaacatgttaacttctccattgtttatgacctgggaggtagcacgg 66  Q
    |||||||| || |||||| ||| |||||||||||||||| ||| ||||||||||    
T  40155 tcatattgtaatatgttagcttttccattgtttatgacccgggcggtagcacgg 40102  T

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