View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_low_55 (Length: 249)
Name: NF15449_low_55
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_55 |
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| [»] scaffold1236 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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| [»] scaffold0836 (2 HSPs) |
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Alignment Details
Target: scaffold1236 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold1236
Description:
Target: scaffold1236; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2111 - 1872
Alignment:
| Q |
1 |
catgccgattaaacttcggagattataaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
100 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2111 |
catgccgattaaacttgggagattatcaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggtttttgtgatgatcagta |
2012 |
T |
|
| Q |
101 |
gcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagacattgtttccccaattatttcgaccac |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||| ||| |||| ||||| |
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| T |
2011 |
gcatcaatgtgcccaaatatgtattccaatttctcacaatcatcaactttgagcttttttaattttgggaagacattgtttccccgattgtttccaccac |
1912 |
T |
|
| Q |
201 |
tgtcatcttcaatgtctactattatgtgctccagttcatc |
240 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |||||| |
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| T |
1911 |
tgccatcttcaatgtctactattatgtgctccaattcatc |
1872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 70646 - 70885
Alignment:
| Q |
1 |
catgccgattaaacttcggagattataaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
100 |
Q |
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|||||||||||||||| |||| ||| |||| ||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
70646 |
catgccgattaaactttggagtctatgaagcttgagatatttcaaagctggaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
70745 |
T |
|
| Q |
101 |
gcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagacattgtttccccaattatttcgaccac |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
70746 |
gcatcaatgtgcccaaatatgtattccaatttctcacaagaaaagacgaggagctcttttaattttgggaagacattgtttccccaattatttccaccac |
70845 |
T |
|
| Q |
201 |
tgtcatcttcaatgtctactattatgtgctccagttcatc |
240 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |||||| |
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| T |
70846 |
tgccatcttcaatgtctactattatgtgctccaattcatc |
70885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 973 - 1212
Alignment:
| Q |
1 |
catgccgattaaacttcggagattataaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
100 |
Q |
| |
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||||| ||| |||||| ||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
973 |
catgctgatgaaacttttgagcttataaagcacgagacgttccaaagctgaaagatgaaggtgggtcacctcattattgtggttttggtgatgatctgta |
1072 |
T |
|
| Q |
101 |
gcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagacattgtttccccaattatttcgaccac |
200 |
Q |
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|
||||||||||||||||||||| |||||| |||||||||| || || || |||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1073 |
gcatcaatgtgcccaaatatgtattccactttctcacaataagcaatgtggagcacttttaattttgggaagacattgtttccccaattatttccaccac |
1172 |
T |
|
| Q |
201 |
tgtcatcttcaatgtctactattatgtgctccagttcatc |
240 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||| |||||| |
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| T |
1173 |
tgccatctccaatgtctactattatgtgctccaattcatc |
1212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4495 - 4728
Alignment:
| Q |
1 |
catgccgattaaacttcggagattataaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
100 |
Q |
| |
|
|||||||| ||||||| |||||| || ||| ||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4495 |
catgccgactaaacttgggagatgatcaagatcgaggcattccaaagctggaagatgaaggtgggtcacctcattattgtggttttggtgatgattagta |
4594 |
T |
|
| Q |
101 |
gcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagacattgtttccccaattatttcgaccac |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
4595 |
gcatcaatgtgcccaaatatgtattccaatttctcacaatgatcaacgttgagctcttttaattttgggaagacatt------ccaattatttccaccac |
4688 |
T |
|
| Q |
201 |
tgtcatcttcaatgtctactattatgtgctccagttcatc |
240 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||| |
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| T |
4689 |
tgccatcttcaatgtctactattatgtgctccaattcatc |
4728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27346149 - 27345913
Alignment:
| Q |
1 |
catgccgattaaacttcggagattataaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
100 |
Q |
| |
|
|||||||| ||||||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
27346149 |
catgccgactaaacttgggagattaagaagcacgagacgttccaaaggtagaagatgaaggtgggtcacctcattat---ggtttttgtgatgatcagta |
27346053 |
T |
|
| Q |
101 |
gcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagacattgtttccccaattatttcgaccac |
200 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||| || | ||| |||| ||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
27346052 |
gcatcaatgtgcccaaatatgtataccaatttcgcacaagaaatgacgaggagctcttttaattttgggaagacattgtttccccaattgtttccaccac |
27345953 |
T |
|
| Q |
201 |
tgtcatcttcaatgtctactattatgtgctccagttcatc |
240 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| |||||| |
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|
| T |
27345952 |
tgccatctttaatgtctactattatgtgctccaattcatc |
27345913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 18713983 - 18714172
Alignment:
| Q |
51 |
gaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagtagcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgtt |
150 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| |
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|
| T |
18713983 |
gaagatgaagttggatcacctcattattgtggttgtggtgatgatcactagcatcaatgtgcccaaatatgtattccaatttctcacaatcatcaacgtc |
18714082 |
T |
|
| Q |
151 |
gagcctttttaattttgggaagacattgtttccccaattatttcgaccactgtcatcttcaatgtctactattatgtgctccagttcatc |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||| |||||| |
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|
| T |
18714083 |
gagctcttttaattttgggaagacattgtttccccaattgtttccaccactgccatattcaatgtctactattatgtgctccaattcatc |
18714172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 27372836 - 27372592
Alignment:
| Q |
1 |
catgccgattaaacttcggagattataaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
100 |
Q |
| |
|
|||||||| ||||| |||||| || |||| |||||| || ||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
27372836 |
catgccgactaaacgtcggagtctacgaagcttgagacatttcaaagctggaagatgaaagtgggtcacttcattattgtggttttggtgatgatcagta |
27372737 |
T |
|
| Q |
101 |
gcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagacattgtttccccaattatttcgaccac |
200 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||| | | ||| | ||| ||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
27372736 |
gcatcaatgtgcccaaatatgtatttcaatttcgtacaatattcaacttcgagatcttttaattttgggaagacattgtttcccccattatttccaccac |
27372637 |
T |
|
| Q |
201 |
tgtcatcttcaatgtctactattatgtgctccagttcatctcact |
245 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
27372636 |
tgccattatcaatgtctactattatgtgctccagtttatcacact |
27372592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 27396136 - 27396235
Alignment:
| Q |
76 |
attgtggttttggtgatgatcagtagcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagaca |
175 |
Q |
| |
|
|||||||||||| |||| |||| || |||||||||||||||||||| |||| |||||| ||||| ||||| | ||||||||| ||||||||||||||| |
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|
| T |
27396136 |
attgtggttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaatttttaacttcgagccttttcaattttgggaagaca |
27396235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 18029446 - 18029545
Alignment:
| Q |
76 |
attgtggttttggtgatgatcagtagcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagaca |
175 |
Q |
| |
|
||||| |||||| |||| |||| || |||||||||||||||||||| |||| |||||| ||||| | ||||| |||| |||||||| |||||||||| |
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|
| T |
18029446 |
attgtagttttgatgatcatcactatcatcaatgtgcccaaatatgtattctaatttcccacaattttcaacgtagagctcttttaattgtgggaagaca |
18029545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 18079838 - 18080012
Alignment:
| Q |
1 |
catgccgattaaacttcggagattataaagcctgagacgttccaaagatagaagatgaaggtgggtcacctcattattgtggttttggtgatgatcagta |
100 |
Q |
| |
|
|||||||||||||||| | ||| | | ||| |||||| |||||||| | ||| ||||| |||||||||| |||||| ||||| |||| |||| || |
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|
| T |
18079838 |
catgccgattaaacttggaagactccagagcttgagacattccaaagctggaaaatgaatacgggtcacctc---attgtgattttgatgatcatcacta |
18079934 |
T |
|
| Q |
101 |
gcatcaatgtgcccaaatatgcattccaatttctcacaacaattaacgttgagcctttttaattttgggaagacattg |
178 |
Q |
| |
|
|| | |||||| |||| |||| |||||| ||| |||||| | |||||||||| |||||| ||||| ||||||||| |
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|
| T |
18079935 |
gctttaatgtgtccaactatgtattccattttatcacaattttcaacgttgagctcttttaagtttggaaagacattg |
18080012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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