View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_58 (Length: 247)
Name: NF15449_low_58
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 45042983 - 45042776
Alignment:
| Q |
18 |
agaatatcgtgattcacaaacatggtaaaatatgcaagaaattaaatcatataccgtttgtgtcggtaattgatttttcagttagtcgattctgaaggca |
117 |
Q |
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| T |
45042983 |
agaatatcgtgattcacaaacatggtaaaatatgcaagaaattaaatcatataccgtttgtgtcggtaattgatttttcagttagtcgattctgaaggca |
45042884 |
T |
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| Q |
118 |
atcattgaaaacttcc--nnnnnnnnngttctcaaattatttttacttacatcaatgtgacggtgtcttgtatgcaaaggaacatgtaattaagtatatt |
215 |
Q |
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| T |
45042883 |
atcattgaaaacttcctttttttttttgttctcaaattatttttacttacatcaatgtgacggtgtcttgtatgcaaaggaacatgtaattaagtatatt |
45042784 |
T |
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| Q |
216 |
ttattctt |
223 |
Q |
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|||||||| |
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| T |
45042783 |
ttattctt |
45042776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 45039657 - 45039617
Alignment:
| Q |
18 |
agaatatcgtgattcacaaacatggtaaaatatgcaagaaa |
58 |
Q |
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|||||||||||||||| || |||||||||| |||||||||| |
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| T |
45039657 |
agaatatcgtgattcaaaatcatggtaaaagatgcaagaaa |
45039617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 38346831 - 38346867
Alignment:
| Q |
18 |
agaatatcgtgattcacaaacatggtaaaatatgcaa |
54 |
Q |
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| T |
38346831 |
agaatatcgtgattcacaatcatggtaaaagatgcaa |
38346867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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