View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_low_59 (Length: 246)
Name: NF15449_low_59
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_59 |
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| [»] chr4 (9 HSPs) |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 11445678 - 11445449
Alignment:
| Q |
17 |
aaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
116 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
11445678 |
aaaaccaatgactcttactgaattagcttcatctttgaaactccatccttcgaaagttagtgtcctgtatcgtctcttgcgcctgctaacacacaatggt |
11445579 |
T |
|
| Q |
117 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445578 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
11445479 |
T |
|
| Q |
217 |
catgtttgtcaccatttgttagcggagtgc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11445478 |
catgtttgtcaccatttgttagcggagtgc |
11445449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 11547412 - 11547641
Alignment:
| Q |
17 |
aaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
116 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
11547412 |
aaaaccaatgactcttactgaattagcttcatctttgaaactccatccttcgaaagttagtgtcctgtatcgtctcttgcgcctgctaacacacaatggt |
11547511 |
T |
|
| Q |
117 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547512 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
11547611 |
T |
|
| Q |
217 |
catgtttgtcaccatttgttagcggagtgc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
11547612 |
catgtttgtcaccatttgttagcggagtgc |
11547641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 11507181 - 11507406
Alignment:
| Q |
17 |
aaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
116 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11507181 |
aaaaccaatgactcttactgaattagcttcatctttgaaactccacccttctaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
11507280 |
T |
|
| Q |
117 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
216 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11507281 |
ttctttgcgaaaacaacactgatgagtggcaaagaaggagaagaagaaacaatatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
11507380 |
T |
|
| Q |
217 |
catgtttgtcaccatttgttagcgga |
242 |
Q |
| |
|
||||||||||||||||||||| |||| |
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| T |
11507381 |
catgtttgtcaccatttgttaccgga |
11507406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 34775772 - 34775981
Alignment:
| Q |
17 |
aaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
116 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| | | ||| | || |||| ||| | ||||||| |||||| |
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| T |
34775772 |
aaaaccaatgactctttctgaactagcctcatctttgaaacttcacccttctaaagttaatatacttcaccgattcttacgccttttaacacataatggt |
34775871 |
T |
|
| Q |
117 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggaga------agaagaaacaacatattctctcactcctccttcaatgcttctcataagtggca |
210 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||||||| |||||||| | ||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
34775872 |
ttctttgcaaaaacaatagtga---aaggcaaagaaggagatgaagaagaagaaatagcatattctctcacacctccttcaaagcttctcataagtggaa |
34775968 |
T |
|
| Q |
211 |
aatcaacatgttt |
223 |
Q |
| |
|
|| |||||||||| |
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|
| T |
34775969 |
aaccaacatgttt |
34775981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 11468643 - 11468533
Alignment:
| Q |
24 |
atgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttg |
123 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| ||| | |||||||||||||||||||| |||||||||| | |
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| T |
11468643 |
atgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgcgcttgctaacacacgatggtttcttcg |
11468544 |
T |
|
| Q |
124 |
caaaaacaaca |
134 |
Q |
| |
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||||||||||| |
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| T |
11468543 |
caaaaacaaca |
11468533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 11522818 - 11522928
Alignment:
| Q |
24 |
atgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttg |
123 |
Q |
| |
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|||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||| ||| | |||||||||||||||||||| |||||||||| | |
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| T |
11522818 |
atgactgttcctgaattagcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgcgcttgctaacacacgatggtttcttcg |
11522917 |
T |
|
| Q |
124 |
caaaaacaaca |
134 |
Q |
| |
|
||||||||||| |
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|
| T |
11522918 |
caaaaacaaca |
11522928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 34783993 - 34784193
Alignment:
| Q |
17 |
aaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||| ||||| |||| ||| | ||||||||||||| |
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|
| T |
34783993 |
aaaaccaatgactctttctgaattagcctcatctttaaaactccacccttctaaagttaacatcctctatcgattcttacgccttttaacacacaatggc |
34784092 |
T |
|
| Q |
117 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
216 |
Q |
| |
|
|||||| ||||||||||| |||| | || || ||||||||||||| ||||| ||| || || |||||| ||||||||||||||| ||||| | |
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|
| T |
34784093 |
ttctttacaaaaacaaca---gtgaaaagtaatga---agaagaagaaacagcatatggtcttacaccatcttcaaagcttctcataagtggaaaatcga |
34784186 |
T |
|
| Q |
217 |
catgttt |
223 |
Q |
| |
|
||||||| |
|
|
| T |
34784187 |
catgttt |
34784193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 11468528 - 11468448
Alignment:
| Q |
157 |
aagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgtta |
237 |
Q |
| |
|
||||||||||| | ||| ||||||| |||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| |
|
|
| T |
11468528 |
aagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgtta |
11468448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 11522933 - 11523013
Alignment:
| Q |
157 |
aagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaacatgtttgtcaccatttgtta |
237 |
Q |
| |
|
||||||||||| | ||| ||||||| |||||||||| ||||||||| | ||| ||||||| ||||| ||||| |||||| |
|
|
| T |
11522933 |
aagaagaaacagcttatgctctcacacctccttcaaagcttctcatcaatggtgaatcaacttgttttgcaccacttgtta |
11523013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 1838 - 2063
Alignment:
| Q |
17 |
aaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1838 |
aaaaccaatgactcttactgaattagcttcatctttgaaactccacccttctaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggt |
1937 |
T |
|
| Q |
117 |
ttctttgcaaaaacaacactgatgaatggcaaagaaggagaagaagaaacaacatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
216 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1938 |
ttctttgcgaaaacaacactgatgagtggcaaagaaggagaagaagaaacaatatattctctcactcctccttcaatgcttctcataagtggcaaatcaa |
2037 |
T |
|
| Q |
217 |
catgtttgtcaccatttgttagcgga |
242 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
2038 |
catgtttgtcaccatttgttaccgga |
2063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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