View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_61 (Length: 245)
Name: NF15449_low_61
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 36526195 - 36526303
Alignment:
| Q |
112 |
catgtaattactatgactaaagcaagaggaaatatcaaactaacgacatccaaaaaataacctgtattgttagattctaggatcaatcaaatctttacgt |
211 |
Q |
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| T |
36526195 |
catgtaattactatgactaaagcaagaggaaataccaaactaacgacatccaaaaaataacctgtattgttagattctaggatcaatcaaatctttacgt |
36526294 |
T |
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| Q |
212 |
tgccacagt |
220 |
Q |
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||||||||| |
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| T |
36526295 |
tgccacagt |
36526303 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 36526100 - 36526154
Alignment:
| Q |
17 |
caaaggaaagcaattcttaccaacaataccatacttgcagcaatgctattcctgt |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36526100 |
caaaggaaagcaattcttaccaacaataccatacttgcagcaatgctattcctgt |
36526154 |
T |
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