View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_67 (Length: 227)
Name: NF15449_low_67
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_67 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 984373 - 984153
Alignment:
| Q |
7 |
gtaagctggtaggatgtggttcagctgtgccaactcttgagattactaatgacgagcttgcaaaaatagttgatacttctgatgaatggataaatgttcg |
106 |
Q |
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| T |
984373 |
gtaagctggtaggatgtggttcagctgtgccaactcttgagattactaatgacgagcttgcaaaaatagttgatacttctgatgaatggataaatgttcg |
984274 |
T |
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| Q |
107 |
caccgggattcgtaaacgccgagttctttcaggttagtttatttctaacttgctatgtaaccatcattaatagaatggttgcagctgaattgaatttggc |
206 |
Q |
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| T |
984273 |
caccgggattcgtaaacgccgagttctttcaggttagtttatttctaacttgctatgtaaccatcattaatagaatggttgcagctgaattgaatttggc |
984174 |
T |
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| Q |
207 |
ttttatggagtgttgatagtt |
227 |
Q |
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| T |
984173 |
ttttatggagtgttgatagtt |
984153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 45322490 - 45322359
Alignment:
| Q |
13 |
tggtaggatgtggttcagctgtgccaactcttgagattactaatgacgagcttgcaaaaatagttgatacttctgatgaatggataaatgttcgcaccgg |
112 |
Q |
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| T |
45322490 |
tggttggatgtggttctgctttgccatctcttcagattactaatgaagatctttccaaagttgttgatactagtgatgaatggatatatgctcgcacagg |
45322391 |
T |
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| Q |
113 |
gattcgtaaacgccgagttctttcaggttagt |
144 |
Q |
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| T |
45322390 |
gattcggaagcggcgtgttctttcaggttagt |
45322359 |
T |
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