View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_low_69 (Length: 226)
Name: NF15449_low_69
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_69 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 30713294 - 30713105
Alignment:
| Q |
18 |
atgatagaagcatgtcgtagtgttttgcagggtacttgcgtcaagtgtcatgacttgagttgtaatggaaaatgtgataaatgcccaaaatgtgaaagtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30713294 |
atgatagaagcatgtcgtagtgttttgcagggtacttgcgtcaagtgtcatgacttgagttgtaatggaaaatgtgataaatgcccaaaatgtgaaagtc |
30713195 |
T |
|
| Q |
118 |
taaagtgtgatgggaaatattgtgtcacaatttgttttaaatgtgaagattcaaagtgtgatggtaagtgtaaatgtaattgctccaatt |
207 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30713194 |
taaagtgtgatgggaaacattgtgtcacaatttgctttaaatgtgaagattcaaagtgtgatggtaagtgtaaatgtaattgctccaatt |
30713105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 30731604 - 30731432
Alignment:
| Q |
18 |
atgatagaagcatgtcgtagtgttttgcagggtacttgcgtcaagtgtcatgacttgagttgtaatggaaaatgtgataaatgcccaaaatgtgaaagtc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30731604 |
atgatagaagcatgtcgaagtgttttgcagggtacttgcatcaagtgtcatgacatgacttgtaatggaaaatgtgataaatgtccaaaatgtgaaagtc |
30731505 |
T |
|
| Q |
118 |
taaagtgtgatgggaaatattgtgtcacaatttgttttaaatgtgaagattcaaagtgtgatggtaagtgtaa |
190 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30731504 |
taaagtgtgatggaaaacattgtgtgacaatttgctttaaatgtgaagattcaaagtgtgatggtaagtgtaa |
30731432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University