View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_7 (Length: 588)
Name: NF15449_low_7
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 13 - 569
Target Start/End: Original strand, 38752475 - 38753030
Alignment:
| Q |
13 |
gagatgaacaaacctgttgttggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgc |
112 |
Q |
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| T |
38752475 |
gagatgaacaaacctgttgctggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgc |
38752574 |
T |
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| Q |
113 |
agcttcacaacgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgt |
212 |
Q |
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| T |
38752575 |
agcttcacaacgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgt |
38752674 |
T |
|
| Q |
213 |
tcatggcaaaagtaaggtgcaaaaacacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaaccagtcatcatggccg |
312 |
Q |
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| T |
38752675 |
tcatggcaaaagtaaggtgcaaaaatacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaaccagtcatcatggccg |
38752774 |
T |
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| Q |
313 |
taagaatttttggttgtttctggctctcttgtgctaatcataatcatttatcaccatctttatagacnnnnnnngaattaaacaagaggaaagggaagat |
412 |
Q |
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| T |
38752775 |
taagaatttttggttgtttctggctctcttgtgctaatcataatcatttatcaccatctttatagacaaaaaaagaattaaacaagaggaaagggaagat |
38752874 |
T |
|
| Q |
413 |
tattagaacgatgaatattttaattacataaggttcccttaatggcctacatgttaattattttatttcatataaaactatatcaccaaatttttatttg |
512 |
Q |
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| T |
38752875 |
tattagaacgatgaata-tttaatttcataaggttcccttaatggcctacatgttaattattttatttcatataaaactatatcaccaaaattttatttg |
38752973 |
T |
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| Q |
513 |
ttagaaaatgagattcttatttaaaaacatccttatgtgacaaaattaagagatagc |
569 |
Q |
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| T |
38752974 |
ttagaaaatgagattcttatttaaaaacatccttatgtgacaaaattaagagatagc |
38753030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 30904236 - 30903962
Alignment:
| Q |
22 |
aaacctgttgttggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgcagcttcaca |
121 |
Q |
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||||||||||||| || ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
30904236 |
aaacctgttgttgtagggcaaaaatatgtgaaacacatccataaataggatcttgaagtctagcttgagcttcataagagattgtaacagcggcttcgca |
30904137 |
T |
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| Q |
122 |
acgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgttcatggcaa |
221 |
Q |
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| T |
30904136 |
gcgatcacttacagggagatgagcaagaagctttgagacattgcttgcaccaaaaaccttatgaatggctgaaaaatgtgtagcaccttgttcatgagaa |
30904037 |
T |
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| Q |
222 |
aagtaaggtgcaaaaacacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaa |
296 |
Q |
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|| ||||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
30904036 |
aaataaggtgcaaaaacacaacctcttatacattttcttctcaaaaatttgcaagctccacaaggagaaccagaa |
30903962 |
T |
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