View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_low_71 (Length: 212)
Name: NF15449_low_71
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_71 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 5470017 - 5470207
Alignment:
| Q |
11 |
tttacctgtctctagtgcgaccttggatgtaatagtatatgctggtatgatggtggaccccacaagtgaaaatccaggatcatcaggtggtgtataatat |
110 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5470017 |
tttacctgtctctagtgcaacgttggatggaatagtatatgctggtatgacggtggaccccacaagtgaaaatccaggatcatcaggtggtgtataatag |
5470116 |
T |
|
| Q |
111 |
agatcatcaggcatggataagacttcaattccattaataaaaccataattattagaatttccactacttggaatcaaactccactcaagcc |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
5470117 |
agataatcaggcatggataagacttcaattccattaacaaaaccatagttattagaatttccactacttggaataaaactcaaatcaagcc |
5470207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 5476845 - 5476750
Alignment:
| Q |
63 |
gtggaccccacaagtgaaaatccaggatcatcaggtggtgtataatatagatcatcaggcatggataagacttcaattccattaataaaaccataattat |
162 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5476845 |
gtggcccccacaagtgaaaattcaggatca------ggtgtataatatagatcatcaggcatggataagacttcaattccattaataaaaccataattat |
5476752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University