View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_low_75 (Length: 202)

Name: NF15449_low_75
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_low_75
NF15449_low_75
[»] chr6 (22 HSPs)
chr6 (1-151)||(33482085-33482235)
chr6 (60-140)||(17203346-17203426)
chr6 (63-151)||(24222941-24223029)
chr6 (72-140)||(809475-809543)
chr6 (60-140)||(4099792-4099872)
chr6 (83-151)||(16799296-16799364)
chr6 (60-140)||(17906301-17906381)
chr6 (74-149)||(17073104-17073179)
chr6 (70-140)||(23622769-23622839)
chr6 (60-140)||(29201949-29202029)
chr6 (62-140)||(26832020-26832098)
chr6 (100-152)||(24223334-24223386)
chr6 (60-140)||(32208134-32208214)
chr6 (5-53)||(2970111-2970159)
chr6 (89-140)||(34294402-34294453)
chr6 (85-151)||(6601729-6601795)
chr6 (88-140)||(809376-809428)
chr6 (99-143)||(17080412-17080456)
chr6 (104-140)||(23902671-23902707)
chr6 (101-140)||(17011438-17011477)
chr6 (13-84)||(17203376-17203447)
chr6 (104-140)||(17080458-17080494)
[»] chr2 (32 HSPs)
chr2 (57-152)||(15256333-15256428)
chr2 (63-152)||(17930248-17930337)
chr2 (60-140)||(20641315-20641395)
chr2 (57-152)||(27351811-27351906)
chr2 (1-84)||(15256303-15256386)
chr2 (57-140)||(41326930-41327013)
chr2 (73-151)||(11131486-11131564)
chr2 (60-140)||(11658009-11658089)
chr2 (60-140)||(20709366-20709446)
chr2 (63-152)||(15253484-15253573)
chr2 (60-136)||(11736563-11736639)
chr2 (60-140)||(12898437-12898517)
chr2 (60-140)||(14336061-14336141)
chr2 (1-84)||(15253448-15253531)
chr2 (1-84)||(17930212-17930295)
chr2 (77-152)||(24129578-24129653)
chr2 (1-84)||(41326960-41327042)
chr2 (75-140)||(44256883-44256948)
chr2 (60-140)||(10129021-10129101)
chr2 (60-140)||(29550533-29550612)
chr2 (60-140)||(41995258-41995338)
chr2 (83-151)||(41075891-41075961)
chr2 (83-151)||(41076173-41076243)
chr2 (1-58)||(41075578-41075635)
chr2 (11-53)||(15256214-15256256)
chr2 (60-129)||(17370453-17370522)
chr2 (83-140)||(41075608-41075665)
chr2 (1-53)||(27351781-27351833)
chr2 (1-84)||(11131527-11131610)
chr2 (73-140)||(37131007-37131074)
chr2 (1-80)||(11658043-11658121)
chr2 (1-80)||(41995226-41995304)
[»] chr1 (35 HSPs)
chr1 (57-151)||(46533152-46533246)
chr1 (63-152)||(23482421-23482510)
chr1 (63-152)||(41462764-41462853)
chr1 (83-152)||(41461095-41461164)
chr1 (63-151)||(11928469-11928557)
chr1 (60-140)||(12115844-12115924)
chr1 (60-138)||(1648041-1648119)
chr1 (60-140)||(42491802-42491882)
chr1 (60-140)||(44264294-44264374)
chr1 (60-140)||(45417087-45417167)
chr1 (60-136)||(52407709-52407785)
chr1 (60-138)||(51271971-51272049)
chr1 (3-84)||(41462806-41462887)
chr1 (61-140)||(16165429-16165508)
chr1 (61-140)||(21618462-21618541)
chr1 (1-84)||(46533193-46533276)
chr1 (70-135)||(18912900-18912965)
chr1 (1-68)||(46533313-46533380)
chr1 (70-140)||(47791184-47791254)
chr1 (60-124)||(6537404-6537468)
chr1 (98-140)||(25931613-25931655)
chr1 (78-132)||(27891980-27892034)
chr1 (60-137)||(3226716-3226793)
chr1 (60-140)||(38684571-38684651)
chr1 (1-84)||(1648069-1648151)
chr1 (1-84)||(12115874-12115956)
chr1 (3-84)||(6537374-6537454)
chr1 (8-84)||(11928510-11928586)
chr1 (1-53)||(41461142-41461194)
chr1 (12-84)||(52407687-52407759)
chr1 (1-84)||(18912925-18913007)
chr1 (13-84)||(23482397-23482468)
chr1 (102-140)||(43762280-43762318)
chr1 (96-140)||(4100136-4100180)
chr1 (100-140)||(39282212-39282252)
[»] chr7 (38 HSPs)
chr7 (57-152)||(16376248-16376343)
chr7 (57-152)||(41279079-41279174)
chr7 (1-84)||(41279121-41279204)
chr7 (60-140)||(9396165-9396245)
chr7 (60-140)||(22324793-22324873)
chr7 (63-135)||(24788558-24788630)
chr7 (61-140)||(16491845-16491924)
chr7 (70-140)||(28170392-28170462)
chr7 (60-140)||(2354248-2354329)
chr7 (60-137)||(21128577-21128654)
chr7 (60-140)||(16672051-16672131)
chr7 (60-140)||(17646419-17646499)
chr7 (60-140)||(19222643-19222723)
chr7 (60-140)||(40686391-40686471)
chr7 (1-84)||(16376218-16376301)
chr7 (60-140)||(40449597-40449677)
chr7 (81-149)||(46263802-46263870)
chr7 (76-143)||(4455298-4455364)
chr7 (82-140)||(45419142-45419200)
chr7 (60-140)||(48640523-48640603)
chr7 (1-53)||(26454507-26454559)
chr7 (60-140)||(27712173-27712253)
chr7 (60-128)||(32277879-32277947)
chr7 (1-68)||(16376122-16376189)
chr7 (82-132)||(45285979-45286029)
chr7 (83-152)||(4455613-4455681)
chr7 (100-140)||(21224864-21224904)
chr7 (77-140)||(11645562-11645625)
chr7 (101-140)||(35125195-35125234)
chr7 (70-132)||(6250209-6250271)
chr7 (83-143)||(11649588-11649648)
chr7 (12-84)||(22324823-22324895)
chr7 (1-53)||(41279251-41279303)
chr7 (117-152)||(38694700-38694735)
chr7 (1-79)||(21128609-21128686)
chr7 (1-35)||(24787505-24787539)
chr7 (1-78)||(19222679-19222755)
chr7 (100-140)||(18487714-18487754)
[»] chr3 (24 HSPs)
chr3 (63-151)||(25937959-25938047)
chr3 (63-152)||(17755975-17756064)
chr3 (63-152)||(19057295-19057384)
chr3 (80-152)||(25917229-25917301)
chr3 (1-85)||(17756016-17756100)
chr3 (1-85)||(19057336-19057420)
chr3 (60-140)||(20876728-20876808)
chr3 (60-138)||(11523087-11523165)
chr3 (1-84)||(25938000-25938083)
chr3 (70-152)||(2469263-2469345)
chr3 (83-152)||(25716702-25716771)
chr3 (61-140)||(38887072-38887151)
chr3 (83-147)||(9240594-9240658)
chr3 (70-135)||(47502628-47502693)
chr3 (60-120)||(860479-860539)
chr3 (1-53)||(9856272-9856324)
chr3 (1-53)||(25716672-25716724)
chr3 (1-53)||(25917079-25917131)
chr3 (60-140)||(35560458-35560537)
chr3 (60-140)||(51654508-51654588)
chr3 (3-84)||(38887041-38887121)
chr3 (60-112)||(2730714-2730766)
chr3 (74-140)||(10267142-10267208)
chr3 (1-51)||(25917178-25917228)
[»] chr4 (30 HSPs)
chr4 (60-140)||(28379534-28379614)
chr4 (60-140)||(18001787-18001867)
chr4 (60-140)||(24050148-24050228)
chr4 (73-140)||(54653161-54653228)
chr4 (60-140)||(4942157-4942237)
chr4 (60-140)||(7797819-7797899)
chr4 (60-140)||(7822070-7822150)
chr4 (60-140)||(8119064-8119144)
chr4 (60-140)||(28813679-28813759)
chr4 (82-152)||(24389735-24389805)
chr4 (60-140)||(12899930-12900010)
chr4 (60-140)||(22293443-22293523)
chr4 (76-140)||(53144340-53144404)
chr4 (60-140)||(2177592-2177672)
chr4 (60-127)||(7812605-7812672)
chr4 (60-131)||(8397134-8397205)
chr4 (1-52)||(11874760-11874811)
chr4 (70-140)||(12795709-12795779)
chr4 (81-146)||(2527208-2527273)
chr4 (1-58)||(9711492-9711549)
chr4 (60-140)||(8478720-8478800)
chr4 (1-53)||(29013640-29013692)
chr4 (61-140)||(52688940-52689019)
chr4 (89-151)||(9711451-9711513)
chr4 (70-152)||(46883538-46883623)
chr4 (1-84)||(8397102-8397184)
chr4 (1-84)||(4942187-4942269)
chr4 (117-152)||(11874825-11874860)
chr4 (1-84)||(28813709-28813791)
chr4 (99-136)||(47631987-47632024)
[»] chr8 (20 HSPs)
chr8 (70-140)||(3990601-3990671)
chr8 (70-151)||(31249141-31249222)
chr8 (63-140)||(38294755-38294832)
chr8 (60-140)||(30206290-30206370)
chr8 (3-84)||(38294721-38294802)
chr8 (70-140)||(13797746-13797816)
chr8 (70-140)||(44014885-44014955)
chr8 (60-132)||(9389282-9389354)
chr8 (77-140)||(23086188-23086251)
chr8 (70-140)||(23960149-23960219)
chr8 (60-133)||(34948022-34948095)
chr8 (8-84)||(31249105-31249181)
chr8 (82-140)||(30437632-30437690)
chr8 (100-139)||(27853226-27853265)
chr8 (83-149)||(13461668-13461734)
chr8 (12-68)||(31249040-31249096)
chr8 (105-140)||(1276400-1276435)
chr8 (1-53)||(13461639-13461690)
chr8 (100-140)||(14683209-14683249)
chr8 (44-84)||(44014915-44014955)
[»] chr5 (24 HSPs)
chr5 (63-152)||(14854491-14854580)
chr5 (63-142)||(5398190-5398269)
chr5 (60-137)||(9487564-9487641)
chr5 (1-84)||(5398222-5398305)
chr5 (70-140)||(7128007-7128077)
chr5 (63-149)||(7779693-7779778)
chr5 (60-137)||(13104816-13104893)
chr5 (61-140)||(38110358-38110437)
chr5 (70-140)||(16305877-16305947)
chr5 (61-135)||(23141052-23141126)
chr5 (60-137)||(13034843-13034919)
chr5 (60-140)||(41092474-41092554)
chr5 (1-84)||(14854533-14854616)
chr5 (70-140)||(41511457-41511526)
chr5 (3-84)||(7779731-7779812)
chr5 (60-140)||(12441852-12441932)
chr5 (60-140)||(38004245-38004325)
chr5 (1-68)||(3433235-3433302)
chr5 (100-140)||(19322567-19322607)
chr5 (1-67)||(14854644-14854710)
chr5 (82-140)||(19122705-19122762)
chr5 (1-82)||(9487532-9487612)
chr5 (117-151)||(3433203-3433237)
chr5 (1-53)||(31486587-31486639)
[»] scaffold0097 (1 HSPs)
scaffold0097 (60-140)||(13204-13284)
[»] scaffold0090 (2 HSPs)
scaffold0090 (83-151)||(12274-12342)
scaffold0090 (1-53)||(12243-12296)
[»] scaffold0013 (1 HSPs)
scaffold0013 (80-140)||(102947-103007)
[»] scaffold0001 (2 HSPs)
scaffold0001 (83-143)||(196271-196331)
scaffold0001 (1-84)||(196215-196298)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 1e-70; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 33482085 - 33482235
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggtagccgagtttgaatgaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  33482085 agagaaacacggtttagggtttgttatatatagccgaggttgcatgaaaattagggtagccaagtttgaatggaaattagggtagccgagtttgaatgaa 33482184  T
Q  101 aattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33482185 aattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 33482235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 17203426 - 17203346
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  17203426 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 17203346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 24222941 - 24223029
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||||||| ||||||||  ||||||||||| ||||||||| ||||||| || || ||||||||||||||||||||||||||||||||    
T  24222941 agtttgaatgaaaattaggagagccgagtttgcatgaaaattggggtattatgtttttaaacgtattaaataagtgtacaacaacttgt 24223029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 809543 - 809475
Alignment:
Q  72 ggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||| |||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  809543 ggaaattagggtagccaagtttgcatgaaaattaaggtattctgtttgtaaacgtattaaataagtgta 809475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 4099792 - 4099872
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  |||||||||||| ||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  4099792 ccaagtttacatggaaattaggttagccgaatttgcatgaaaattagggtattttgtttgtaaacgtattaaataagtgta 4099872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 16799296 - 16799364
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  16799296 tagccgagtttgcatgaaaattagggtattatgtttgtaaatgtattaaataagtgtacaacaacttgt 16799364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 17906301 - 17906381
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||| ||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||    
T  17906301 ccaagtttacatggaaattcgggtagccgagtttgcatggaaattagggtattatgtttgtaaacgtattaaataagtgta 17906381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 17073104 - 17073179
Alignment:
Q  74 aaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaactt 149  Q
    |||||| |||||| ||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  17073104 aaattaaggtagctgagtttgcatgaaaattagggtattttgtttgtaaatgtattaaataagtgtacaacaactt 17073179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 23622839 - 23622769
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||  ||||||||||||||||||||||||    
T  23622839 atggaaattagggtagtcgagtttgcatggaaattagggtattctttttgtaaacgtattaaataagtgta 23622769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 29202029 - 29201949
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||| ||||    
T  29202029 ccaagtttacatgaaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacatattaaataaatgta 29201949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 26832020 - 26832098
Alignment:
Q  62 aagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||| ||||||||||| ||||||| |||||| ||| |||||| | ||||||| ||||||||||||||||||||||||    
T  26832020 aagtttaaatggaaattacggtagcctagtttgcatggaaattaagatattctgtttgtaaacgtattaaataagtgta 26832098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 24223334 - 24223386
Alignment:
Q  100 aaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  24223334 aaattagggtattctgtttgtaaatgtattaaataagtgtacaacaacttgtc 24223386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 32208134 - 32208214
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||||||| |||||||  |||||||||||| |||||||||||    
T  32208134 ccaagtttacatggagattagggtagccgagtttgtatggaaattagcgtattctatttgtaaacgtatcaaataagtgta 32208214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 2970111 - 2970159
Alignment:
Q  5 aaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  2970111 aaactcggtttagggtttgctatatatagccgagtttgcatggaaatta 2970159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 34294453 - 34294402
Alignment:
Q  89 agtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  34294453 agtttgcatgaaaattagggtattctgtttgtaaacatattaaataagtgta 34294402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 6601729 - 6601795
Alignment:
Q  85 gccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||||||| ||| || |||||||||| || | ||||| |||||||||||||||||||||||||||    
T  6601729 gccgagtttgcatggaacttagggtattatgttcgtaaatgtattaaataagtgtacaacaacttgt 6601795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 809428 - 809376
Alignment:
Q  88 gagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||| |||||||||| |||| |||| ||||||||||||||||||||||||    
T  809428 gagtttgcatgaaaattaaggtactctgtttgtaaacgtattaaataagtgta 809376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 17080456 - 17080412
Alignment:
Q  99 aaaattagggtattctggttgtaaacgtattaaataagtgtacaa 143  Q
    |||||||||||||| || |||||||||| ||||||||||||||||    
T  17080456 aaaattagggtattttgtttgtaaacgtgttaaataagtgtacaa 17080412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 23902707 - 23902671
Alignment:
Q  104 tagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23902707 tagggtattctgtttgtaaacgtattaaataagtgta 23902671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 17011477 - 17011438
Alignment:
Q  101 aattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  17011477 aattagggtattctgtttgtaaacgtgttaaataagtgta 17011438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 17203447 - 17203376
Alignment:
Q  13 tttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||||||    
T  17203447 tttagggattggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggta 17203376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 17080494 - 17080458
Alignment:
Q  104 tagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||| || ||||||||||||||||||||||||    
T  17080494 tagggtattttgtttgtaaacgtattaaataagtgta 17080458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 15256333 - 15256428
Alignment:
Q  57 tagccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  15256333 tagccaagtttgcatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgtacaataacttgtc 15256428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 17930248 - 17930337
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||| ||||||||||||||| || |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  17930248 agtttgcatggaaattagggtacccaagtttgcatgaaaattagggtattatgtttgtaaacgtattaaataagtgtacaacaacttgtc 17930337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 20641315 - 20641395
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  20641315 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 20641395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 27351811 - 27351906
Alignment:
Q  57 tagccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    ||||| |||||| |||||||||||||||| |||||||| || || |||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  27351811 tagccgagtttgcatggaaattagggtagtcgagtttgcataaatattagggtattctgtttgtaaatgtattaaataagtgtacaacaacttgtc 27351906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 15256303 - 15256386
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||||| |||||| |||||||||||||||    
T  15256303 agagaaacacggtttagggtttgctatatatagccaagtttgcatggaaattagggtagccgagtttgcatggaaattagggta 15256386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 41327013 - 41326930
Alignment:
Q  57 tagccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||    
T  41327013 tagccgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataattgta 41326930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 11131564 - 11131486
Alignment:
Q  73 gaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    ||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||    
T  11131564 gaaattatggtagccgagtttgcatgaaaattagggtattttgtttgtaaacgtattaaataagtgtacaataacttgt 11131486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 11658089 - 11658009
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||    
T  11658089 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagagtattctgtttgtaaacgtattaaataagtgta 11658009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 20709446 - 20709366
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  20709446 ccaagtttacatggaaattagggtatctgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 20709366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 15253484 - 15253573
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||| || ||||||| ||||| |||||||| ||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||    
T  15253484 agtttgcatcgaaattatggtagtcgagtttgcatggaaattaaggtattctatttgtaaacgtattaaataagtgtacaacaacttgtc 15253573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 11736639 - 11736563
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataag 136  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||    
T  11736639 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattacggtattctgtttgtaaacgtatcaaataag 11736563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 12898517 - 12898437
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||  || |||||||||||||||| ||||    
T  12898517 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctatttctaaacgtattaaataattgta 12898437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 14336061 - 14336141
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||| |||||    
T  14336061 ccaagtttacatgaaaattagggtagccgagtttgcatggaaattagagtattctgtttgtaaacgtattaaatatgtgta 14336141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 15253448 - 15253531
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||||||||||||||||||||||| |||| |||| |||||| |||||||| |||| | |||||| |||||||||| ||||    
T  15253448 agagaaacacggtttagggtttgctatacatagtcgagtttgcatcgaaattatggtagtcgagtttgcatggaaattaaggta 15253531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 17930212 - 17930295
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||  ||| ||||||||| ||| |||||||||||    
T  17930212 agagaaacatggtttagggttttctatatatatccgagtttgcatggaaattagggtacccaagtttgcatgaaaattagggta 17930295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 24129653 - 24129578
Alignment:
Q  77 ttagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||| | ||||||| ||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||    
T  24129653 ttagggtaactgagtttgcatggaaattagagtattctgtttgtaaacatattaaataagtgtacaacaacttgtc 24129578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 41327042 - 41326960
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||  |||||| |||||| |||||||||||||||    
T  41327042 agagaaacacg-tttagggcttggtatatatagccgagtttgcatggaaattagggtagccgagtttgcatggaaattagggta 41326960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 44256948 - 44256883
Alignment:
Q  75 aattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||||||| ||| |||||||||||||||  |||||||| |||||||||||||||    
T  44256948 aattagggtagccgagtttgcatggaaattagggtattctatttgtaaacatattaaataagtgta 44256883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 10129021 - 10129101
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  |||||||||||||||| |||||||| ||| |||||| ||||||||| | |||||| |||||||||||||||    
T  10129021 ccaagtttacatggaaattagggtagtcgagtttgcatggaaattaaggtattctgttcgtaaacatattaaataagtgta 10129101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 29550612 - 29550533
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| || | ||||||||||| ||||||||||||||||||| ||||    
T  29550612 ccaagtttacatggaaattagggtagccgagtttgcatggaa-tcagggtattctgtttgtaaacgtattaaataaatgta 29550533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 41995258 - 41995338
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  || ||||||||||||||| |||||| ||| |||||||  ||||||| ||||||||||||||||||||||||    
T  41995258 ccaagtttacatagaaattagggtagccaagtttgcatggaaattagattattctgtttgtaaacgtattaaataagtgta 41995338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 41075891 - 41075961
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtg--tacaacaacttgt 151  Q
    |||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||  |||||||||||||    
T  41075891 tagccgagtttgcatggaaattagggtattctgtttgcaaacgtattaaataagtgtatacaacaacttgt 41075961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 41076173 - 41076243
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtg--tacaacaacttgt 151  Q
    |||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||||  |||||||||||||    
T  41076173 tagccgagtttgcatggaaattagggtattctgtttgcaaacgtattaaataagtgtatacaacaacttgt 41076243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41075578 - 41075635
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagta 58  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  41075578 agagaaacgcggtttagggtttgctatacatagccgagtttgcatggaaattagagta 41075635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 15256214 - 15256256
Alignment:
Q  11 ggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  15256214 ggtttagggtttgctatatatagccgagtttgcatggaaatta 15256256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 17370522 - 17370453
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtatt 129  Q
    ||||||||  ||||||||||| ||||||||||||  | |||||||| ||||||||| |||||||||||||    
T  17370522 ccaagtttacatggaaattagagtagccgagttttcaagaaaattaaggtattctgtttgtaaacgtatt 17370453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 41075608 - 41075665
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||| ||| ||||||| ||||| || ||||||||||||||||||||||||    
T  41075608 tagccgagtttgcatggaaattagagtattttgtttgtaaacgtattaaataagtgta 41075665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27351781 - 27351833
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||||  ||||||||| ||||||||||||||| ||||||||||||||    
T  27351781 agagaaacacgcattagggtttactatatatagccgagtttgcatggaaatta 27351833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11131610 - 11131527
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||| ||||||||||| |||||  ||  |||||| |||||||| |||||| |||||| ||| |||||||||||    
T  11131610 agagaaacacgattttgggtttgctatttatagttgaatttgcattgaaattatggtagccgagtttgcatgaaaattagggta 11131527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 37131007 - 37131074
Alignment:
Q  73 gaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||| ||||| |||||| ||| ||||||||||||| |  |||||||| |||||||||||||||    
T  37131007 gaaattaggatagccaagtttgcatgcaaattagggtattatatttgtaaacatattaaataagtgta 37131074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11658121 - 11658043
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattag 80  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||    
T  11658121 agagaaacacg-tttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattag 11658043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41995226 - 41995304
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattag 80  Q
    ||||||||||| ||||||| ||| |||||||| || || || ||| |||||||  ||||||||||||| |||||||||||    
T  41995226 agagaaacacg-tttagggcttggtatatataaccaagtttacatagaaattagggtagccaagtttgcatggaaattag 41995304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 9e-35; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 46533246 - 46533152
Alignment:
Q  57 tagccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    ||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46533246 tagccgagtttgcatggaaattagggtagtcgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgtacaacaacttgt 46533152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 23482421 - 23482510
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||| |||||||||||||||| ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23482421 agtttgtatggaaattagggtagtcgaatttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgtacaacaacttgtc 23482510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 41462853 - 41462764
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||| ||||||||||||||||| || |||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  41462853 agtttgcatggaaattagggtagctgaatttgcatggaaattagggtattttgtttgtaaacgtattaaataagtgtacaacaacttgtc 41462764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 41461164 - 41461095
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41461164 tagcccagtttggatgaaaattagggtattctgtttgtaaacgtattaaataagtgtacaacaacttgtc 41461095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 11928557 - 11928469
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||| ||| |||||||||||| |||||||  ||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  11928557 agtttgcatgaaaattagggtagtcgagttttcatggaaattagggtattctgtttgtaaaagtattaaataagtgtacaacaacttgt 11928469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 12115924 - 12115844
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||    
T  12115924 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattttgtttgtaaacgtattaaataagtgta 12115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 1648119 - 1648041
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtg 138  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||    
T  1648119 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattttgtttgtaaacgtattaaataagtg 1648041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 42491802 - 42491882
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  |||||||||||| ||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  42491802 ccaagtttacatggaaattaggatagtcgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 42491882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 44264374 - 44264294
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||| ||||||| | ||||||||||||||||||||||||    
T  44264374 ccaagtttacatggaaattagggtagccgagtttgcatggaaattatggtattcagtttgtaaacgtattaaataagtgta 44264294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 45417087 - 45417167
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||| |||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  45417087 ccaagtttacatggagattacggtagccgagtttgcatgcaaattagggtattctgtttgtaaacgtattaaataagtgta 45417167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 52407709 - 52407785
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataag 136  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||    
T  52407709 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttataaacgtattaaataag 52407785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 51271971 - 51272049
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtg 138  Q
    ||||||||  |||||||||||||||| |||||||| ||| |||||| ||||||||| ||||||||||||||||||||||    
T  51271971 ccaagtttacatggaaattagggtagtcgagtttgcatggaaattaaggtattctgtttgtaaacgtattaaataagtg 51272049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 41462887 - 41462806
Alignment:
Q  3 agaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||  | |||| |||||||||||||||    
T  41462887 agaaacacggtttagggtttgctatatatagctgagtttgcatggaaattagggtagctgaatttgcatggaaattagggta 41462806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 16165429 - 16165508
Alignment:
Q  61 caagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||  |||||||||| ||||||||| |||| ||| |||||||| ||||||| ||||||||||||||||||||||||    
T  16165429 caagtttacatggaaattacggtagccgaatttgcatggaaattaggatattctgtttgtaaacgtattaaataagtgta 16165508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 21618541 - 21618462
Alignment:
Q  61 caagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||  |||||||||| || ||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  21618541 caagtttacatggaaattacggaagctgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 21618462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 46533276 - 46533193
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||||||  |||| | |||||| ||| |||||||||||    
T  46533276 agagaagcacggtttagagtttgctatatatagccgagtttgcatggaaattagggtagtcgagtttgcatgaaaattagggta 46533193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 18912965 - 18912900
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataa 135  Q
    ||||||||||  ||||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
T  18912965 atggaaattaaagtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataa 18912900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 46533380 - 46533313
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttg 68  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||  |||||| ||||||    
T  46533380 agagaaacacggtttagggttttctatatatagccgagtttgcgtggaaattagggtagccgagtttg 46533313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 47791254 - 47791184
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||| |||| |||||| ||| |||||||||||||||  ||||||||||||||||||| ||||    
T  47791254 atggaaattaggggagccaagtttgcatggaaattagggtattctatttgtaaacgtattaaataaatgta 47791184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 6537404 - 6537468
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaac 124  Q
    ||||||||  |||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||    
T  6537404 ccaagtttacatggaaattagggtaggcgagtttgcatggaaattagggtattctgtttgtaaac 6537468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 25931613 - 25931655
Alignment:
Q  98 gaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  25931613 gaaaattagggtattctgtttgtaaacgtattaaataagtgta 25931655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 27892034 - 27891980
Alignment:
Q  78 tagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaa 132  Q
    ||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||    
T  27892034 tagggtagccgagtttacatgaaaattaaggtattctgtttgtaaacgtattaaa 27891980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 3226716 - 3226793
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagt 137  Q
    ||||||||  |||||||||||||||| |||||||| ||| |||||||| |||| || ||||||| |||||||| ||||    
T  3226716 ccaagtttacatggaaattagggtagtcgagtttgcatggaaattaggatattttgtttgtaaatgtattaaaaaagt 3226793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 38684651 - 38684571
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||| ||||||| |||  |||||   ||||||| |||||||| |||||||||||||||    
T  38684651 ccaagtttacatggaaattagggtagctgagtttgcatgggaattataatattctgtttgtaaacatattaaataagtgta 38684571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1648151 - 1648069
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||||||    
T  1648151 agagaaacacg-tttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggta 1648069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12115956 - 12115874
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||||||    
T  12115956 agagaaacacg-tttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggta 12115874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 6537374 - 6537454
Alignment:
Q  3 agaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||| ||||||||||| |||||||| || || || |||||||||||  |||| | |||||| |||||||||||||||    
T  6537374 agaaacacg-tttagggtttggtatatataaccaagtttacatggaaattagggtaggcgagtttgcatggaaattagggta 6537454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 11928586 - 11928510
Alignment:
Q  8 cacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||||| ||||| |||||||||| ||| ||||||| ||||||  |||| | |||||  |||||||||||||||    
T  11928586 cacggtttagagtttgttatatatagctgagtttgcatgaaaattagggtagtcgagttttcatggaaattagggta 11928510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41461194 - 41461142
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    ||||||||| ||||||||||||||||||||||||| || ||| ||| ||||||    
T  41461194 agagaaacatggtttagggtttgctatatatagcccagtttggatgaaaatta 41461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 52407687 - 52407759
Alignment:
Q  12 gtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||||||    
T  52407687 gtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggta 52407759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 18913007 - 18912925
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||||||| ||| |||||||| || |  ||  |||||||||| ||||||| |||||| |||||||||||||||    
T  18913007 agagaaacacg-tttagggcttggtatatataaccaaatttatatggaaattaaagtagccgagtttgcatggaaattagggta 18912925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 23482397 - 23482468
Alignment:
Q  13 tttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||||||| ||||||||| ||| ||| ||||||||||  |||| | | |||| |||||||||||||||    
T  23482397 tttagggtttgcaatatatagctgagtttgtatggaaattagggtagtcgaatttgcatggaaattagggta 23482468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 43762318 - 43762280
Alignment:
Q  102 attagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  43762318 attagggtattctatttgtaaacgtattaaataagtgta 43762280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 4100136 - 4100180
Alignment:
Q  96 atgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||| |||||||||  |||| |||||||||||||||||||    
T  4100136 atgaaaatttgggtattctatttgttaacgtattaaataagtgta 4100180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 39282252 - 39282212
Alignment:
Q  100 aaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||| ||||||||| |||||| |||||||||||||||||    
T  39282252 aaattaaggtattctgtttgtaaccgtattaaataagtgta 39282212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 16376248 - 16376343
Alignment:
Q  57 tagccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    ||||| |||||| |||||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16376248 tagccgagtttgcatggaaattagggtggccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgtacaacaacttgtc 16376343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 41279174 - 41279079
Alignment:
Q  57 tagccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    ||||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  41279174 tagccgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaatgtattaaataagtgtacaacaacttgtc 41279079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 41279204 - 41279121
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||| |||||||||||||||    
T  41279204 agagaaacacggtttagggtttgctatatatagccgagtttgcatggaaattagggtagccgagtttgcatggaaattagggta 41279121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 9396245 - 9396165
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  9396245 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctatttgtaaacgtattaaataagtgta 9396165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 22324873 - 22324793
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  22324873 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 22324793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 24788558 - 24788630
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataa 135  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  24788558 agtttgcatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataa 24788630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 16491845 - 16491924
Alignment:
Q  61 caagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||    
T  16491845 caagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaatgtattaaataagtgta 16491924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 28170462 - 28170392
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||    
T  28170462 atggaaattagggtagccgagtttgcatgaaatctagggtattctgtttgtaaacgtattaaataagtgta 28170392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 2354248 - 2354329
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgt-aaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||||||||    
T  2354248 ccaagtttatatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttttaaaacgtattaaataagtgta 2354329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 21128654 - 21128577
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagt 137  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||| | ||||||| |||||||||||||||||||||    
T  21128654 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattatgatattctgtttgtaaacgtattaaataagt 21128577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 16672131 - 16672051
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| || |||||||| |||||||||||||||    
T  16672131 ccaagtttacatggaaattagggtagccgagtttgtatggaaattagggtattatgtttgtaaacatattaaataagtgta 16672051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 17646499 - 17646419
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||| || |||||||| |||||||||||||||    
T  17646499 ccaagtttacatggaaattagggtagccgagtttgtatggaaattagggtattatgtttgtaaacatattaaataagtgta 17646419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 19222723 - 19222643
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||| | |||||||| ||||||||||||||||||||||||    
T  19222723 ccaagtttacatggaaattagggtagccgagtttgcatggaaattggagtattctgtttgtaaacgtattaaataagtgta 19222643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 40686391 - 40686471
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  || ||||||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  40686391 ccaagtttacatagaaattatggtggccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 40686471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16376218 - 16376301
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||  || ||| |||||| |||||||||||||||    
T  16376218 agagaaacatggtttagggtttgatatatatagccgagtttgcatggaaattagggtggccgagtttgcatggaaattagggta 16376301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 40449597 - 40449677
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| | |||||||||||||| | |||||||||| |||||||||||    
T  40449597 ccaagtttacatggaaattagggtagccgagtttgcatggatattagggtattctgctcgtaaacgtataaaataagtgta 40449677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 46263802 - 46263870
Alignment:
Q  81 ggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaactt 149  Q
    ||||||| |||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||||    
T  46263802 ggtagccaagtttgcatgaaacttagggtattttgtttgtaaacgtattaaataagtgtacaacaactt 46263870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 4455364 - 4455298
Alignment:
Q  76 attagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaa 143  Q
    ||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||    
T  4455364 attagggtagccgtgtttgcatgaaaattagggtat-ctgtttgtaaacgtattaaataagtgtacaa 4455298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 45419142 - 45419200
Alignment:
Q  82 gtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  45419142 gtagccgagtttgcatgaaaattagggtattttgtttgtaaacgtattaaataagtgta 45419200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 48640523 - 48640603
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||||||||||||||||||| |||||||||| | ||||||  ||||||| ||||||||||||||||    
T  48640523 ccaagtttacatgaaaattagggtagccgagtttgcatgaaaattatgatattctatttgtaaatgtattaaataagtgta 48640603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26454559 - 26454507
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||||||||| |||||||||||||||| |||| ||||||||||||||    
T  26454559 agagaaacacggtttaaggtttgctatatatagtcgagtttgcatggaaatta 26454507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 27712173 - 27712253
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| |||||||| |||||||||||| ||| ||||||||||||| || || ||||| |||||||||||||||    
T  27712173 ccaagtttacatgaaaattaggttagccgagtttgcatggaaattagggtattttgtttctaaacatattaaataagtgta 27712253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 32277879 - 32277947
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtat 128  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||| |||||| || | ||||||||||    
T  32277879 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattatggtattatgttcgtaaacgtat 32277947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 16376122 - 16376189
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttg 68  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||| |||||||  |||||| ||||||    
T  16376122 agagaaacacggtttaggttttgctatatatagcggagtttgcatagaaattagggtagccgagtttg 16376189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 45286029 - 45285979
Alignment:
Q  82 gtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaa 132  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  45286029 gtagccgagtttgcatgaaaattagggtattttgtttgtaaacgtattaaa 45285979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 4455681 - 4455613
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||| ||||||| ||||||||| || ||||||| ||||||||||||||||||| |||||| |||||||||    
T  4455681 tagctgagtttgcatgaaaatt-ggatattctgtttgtaaacgtattaaataaatgtacagcaacttgtc 4455613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 21224904 - 21224864
Alignment:
Q  100 aaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  21224904 aaattagggtattctgtttgtaaacgtattaaataagtgta 21224864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 11645562 - 11645625
Alignment:
Q  77 ttagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||| ||| ||||| ||||||  |||||| |||||||||||||||| |||||||    
T  11645562 ttagggtagccgagcttgcatgaagattaggaaattctgtttgtaaacgtattaaacaagtgta 11645625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 35125234 - 35125195
Alignment:
Q  101 aattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  35125234 aattagggtattctgtttgtaaacgtattaaataagtgta 35125195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 6250271 - 6250209
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaa 132  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||| ||  ||||||| |||||||    
T  6250271 atggaaattagggtagctgagtttgcatggaaattagggtattatgtgtgtaaacttattaaa 6250209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 11649588 - 11649648
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaa 143  Q
    |||||||||||| ||| |||||| | ||||||  ||||||||||||||||||||| |||||    
T  11649588 tagccgagtttgcatggaaattaagatattctatttgtaaacgtattaaataagtatacaa 11649648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 22324895 - 22324823
Alignment:
Q  12 gtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||||||    
T  22324895 gtttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggta 22324823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41279303 - 41279251
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||||||||||||||||| ||||| || |||| ||||||| ||||||    
T  41279303 agagaaacacggtttagggtttgcgatataaagtcgagtttgcatgaaaatta 41279251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 38694700 - 38694735
Alignment:
Q  117 ttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||||||||||||||||||||||||| |||||    
T  38694700 ttgtaaacgtattaaataagtgtacaacaatttgtc 38694735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 21128686 - 21128609
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaatta 79  Q
    ||||||||||| ||||||||||| |||||||| || || || |||||||||||  |||||| |||||| ||| ||||||    
T  21128686 agagaaacacg-tttagggtttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaatta 21128609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24787505 - 24787539
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagcc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  24787505 agagaaacacagtttagggtttgctatatatagcc 24787539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 19222755 - 19222679
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaatt 78  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||    
T  19222755 agagaaacacg-tttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaatt 19222679  T

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Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 18487754 - 18487714
Alignment:
Q  100 aaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||| ||||| || ||||||||||||||||||||||||    
T  18487754 aaattagagtattttgtttgtaaacgtattaaataagtgta 18487714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 25938047 - 25937959
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||| |||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25938047 agtttgcatggaaattagggtagccgaatttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgtacaacaacttgt 25937959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 17756064 - 17755975
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  17756064 agtttgcatggaaattagggtagccgagtttgcatggaaattagggtagtctaattgtaaacgtattaaataagtgtacaacaacttgtc 17755975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 19057384 - 19057295
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  19057384 agtttgcatggaaattagggtagccgagtttgcatggaaattagggtagtctaattgtaaacgtattaaataagtgtacaacaacttgtc 19057295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 25917229 - 25917301
Alignment:
Q  80 gggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25917229 gggtagccgagtttgcgtgaaaattagggtattctgtttgtaaacgtattaaataagtgtacaacaacttgtc 25917301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17756100 - 17756016
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggtag 85  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||  |||||| |||||| ||||||||||||||||    
T  17756100 agagaaacgcggtttagggtttgctatatatagctgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtag 17756016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19057420 - 19057336
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggtag 85  Q
    |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||  |||||| |||||| ||||||||||||||||    
T  19057420 agagaaacgcggtttagggtttgctatatatagctgagtttgcatggaaattagggtagccgagtttgcatggaaattagggtag 19057336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 20876728 - 20876808
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  20876728 ccaaatttaaatgaaaattagggtagccgagtttgcatgaaaattagggtattttgtttgtaaacgtattaaataagtgta 20876808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 11523165 - 11523087
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtg 138  Q
    ||||||||  |||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  11523165 ccaagtttacatggaaattagggtagtcgagtttgcatgaaaattagggtattatgtttgtaaacgtattaaataagtg 11523087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25938083 - 25938000
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  |||||| | |||| |||||||||||||||    
T  25938083 agagaaacacggtttagggtttgttatatatagtcgagtttgcatggaaattagggtagccgaatttgcatggaaattagggta 25938000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 2469345 - 2469263
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||||||||||  |||||||| ||| |||||| |||| |||  ||||||||||||||||||||||||||||||||||||    
T  2469345 atggaaattagggtaatcgagtttgcatggaaattaaggtagtctatttgtaaacgtattaaataagtgtacaacaacttgtc 2469263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 25716702 - 25716771
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||||||  ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  25716702 tagccgagttttcatgtaaattaggatattctgtttgtaaacgtattaaataagtgtacaacaacttgtc 25716771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 38887072 - 38887151
Alignment:
Q  61 caagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||| |||||||| ||||||||| |||||  ||| ||||||||||||| || ||||||||||||||||||||||||    
T  38887072 caagtttgcatggaaatcagggtagccaagttttcatggaaattagggtattatgtttgtaaacgtattaaataagtgta 38887151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 9240594 - 9240658
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaac 147  Q
    ||||| |||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  9240594 tagccaagtttgcatggaaatttgggtattctgtttgtaaacgtattaaataagtgtacaacaac 9240658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 47502628 - 47502693
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataa 135  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||  |||||||||||||||||||    
T  47502628 atggaaattagggtagccgagtttgcatggaaattagaatattctatttgtaaacgtattaaataa 47502693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 860539 - 860479
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgt 120  Q
    ||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||| ||||    
T  860539 ccaagtttacatggaaattagggaagccgagtttgcatgaaaattagggtattctgtttgt 860479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9856272 - 9856324
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||||||||    
T  9856272 agagaaacatagtttagggtttgctatatatagccgagtttgcatggaaatta 9856324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25716672 - 25716724
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  25716672 agagaaacacggtttagggtttgctatatatagccgagttttcatgtaaatta 25716724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25917079 - 25917131
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| |||||    
T  25917079 agagaaacacggtttagggtttgctatatatagctgagtttgcatgggaatta 25917131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 35560537 - 35560458
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||||||||||||||||||| ||| ||||||| ||||||| ||| ||||| |||||||||||||||    
T  35560537 ccaagtttacatgaaaattagggtagccgagtttgcatggaaattagagtattct-gttttaaacttattaaataagtgta 35560458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 51654588 - 51654508
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||| |||||| |||||||| ||| ||||| |||||||||| || |||||||||||||||||||||    
T  51654588 ccaagtttacatgaaaattggggtagtcgagtttgcatggaaattggggtattctgtttataaacgtattaaataagtgta 51654508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 38887041 - 38887121
Alignment:
Q  3 agaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||| ||||||||||| ||||||||  | || |||||||||||| |  ||||||||||||  |||||||||||||||    
T  38887041 agaaacacg-tttagggtttggtatatataatcaagtttgcatggaaatcagggtagccaagttttcatggaaattagggta 38887121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 2730766 - 2730714
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtatt 112  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||| ||||||    
T  2730766 ccaagtttacatggaaattagggtagccgagtttgcatggaaattaaggtatt 2730714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 10267208 - 10267142
Alignment:
Q  74 aaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||| |||||||||||||| ||| ||||||||||||||    | |||| ||||||||||||||||    
T  10267208 aaattaaggtagccgagtttgtatggaaattagggtattccatctataaatgtattaaataagtgta 10267142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25917178 - 25917228
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaat 51  Q
    ||||||||  ||||||||||||||||||||||| |||| ||||||| ||||    
T  25917178 agagaaacgtggtttagggtttgctatatatagtcgagtttgcatgaaaat 25917228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 28379534 - 28379614
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  28379534 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 28379614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 18001787 - 18001867
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  18001787 ccaagtttacatggaaattagggtagccgtgtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 18001867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 24050228 - 24050148
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  24050228 ccaagtttacatggaaattaggatagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 24050148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 54653161 - 54653228
Alignment:
Q  73 gaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  54653161 gaaattagggtagccgagtttgcatggaaattagggtattctggttgtaaacgtattaaataagtgta 54653228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 4942237 - 4942157
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||    
T  4942237 ccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggtatactgtttgtaaacgtattaaacaagtgta 4942157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 7797899 - 7797819
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||||    
T  7797899 ccaagtttatatggaaattagggtagccgagtttgcattgaaattagggtattctgtttgtaaacgtattaaataagtgta 7797819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 7822150 - 7822070
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  |||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  7822150 ccaagtttacatggaaattaggatagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 7822070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 8119144 - 8119064
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  || |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  8119144 ccaagtttacatagaaattagggtagccgagtttgcatgaaaattaaggtattctgtttgtaaacgtattaaataagtgta 8119064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 28813759 - 28813679
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||    
T  28813759 ccaagtttacatggaaattagggtagccgagtttgcatggaaattaaggtattctgtttgtaaacgtattaaataagtgta 28813679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 24389735 - 24389805
Alignment:
Q  82 gtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  24389735 gtagccgagtttgcatgaaaattagggtattctgtttgtaaacatattaaataagtgtacaccaacttgtc 24389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 12900010 - 12899930
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||    
T  12900010 ccaagtttacatgaaaattagggtagccgagtttgcatgaaaattagggcaatctgtttgtaaacgtattaaataagtgta 12899930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 22293523 - 22293443
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  |||||||||||| |||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||||    
T  22293523 ccaagtttacatggaaattaggatagccgagtttgcatagaaattagggtattctgtttgtaaacgtattaaataagtgta 22293443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 53144340 - 53144404
Alignment:
Q  76 attagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  53144340 attagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 53144404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 2177672 - 2177592
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||| |||||||||||| || |||||||||||||||||||||    
T  2177672 ccaagtttacatggagattagggtagccgagtttgcatggaaaatagggtattctgtttataaacgtattaaataagtgta 2177592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 7812672 - 7812605
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgta 127  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  7812672 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgta 7812605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 8397134 - 8397205
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaa 131  Q
    ||||||||  ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  8397134 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacatattaa 8397205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11874760 - 11874811
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatt 52  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11874760 agagaaacacggtttagggtttgctatatatagccgagtttgcatggaaatt 11874811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 12795709 - 12795779
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||||  ||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||    
T  12795709 atggaaattagggtagttgagtttgcatggaaattagagtattctggttgtaaacgtactaaataagtgta 12795779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 2527273 - 2527208
Alignment:
Q  81 ggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaa 146  Q
    |||||||||||||| |||||||||||| |||| || ||||||| ||||||||||||||||||||||    
T  2527273 ggtagccgagtttgcatgaaaattaggatattttgtttgtaaatgtattaaataagtgtacaacaa 2527208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9711549 - 9711492
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagta 58  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||    
T  9711549 agagaaacacggtttagggtttgctatatatagtcaagtttgcatggaaattagagta 9711492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 8478720 - 8478800
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||||| ||||||| ||||| ||| |||||| ||||||||| || |||||||||||||||||||||    
T  8478720 ccaagtttacatgaaaattagtgtagccgggtttgcatggaaattaaggtattctgtttataaacgtattaaataagtgta 8478800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29013640 - 29013692
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  29013640 agagaaacacggtttagggtttactatatatagccgagtttgcatagaaatta 29013692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 52688940 - 52689019
Alignment:
Q  61 caagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||  |||||||||| || ||| ||||||| ||| ||||| |||||||||| |||||||| |||||||||||||||    
T  52688940 caagtttacatggaaattacggaagctgagtttgcatggaaattggggtattctgtttgtaaacatattaaataagtgta 52689019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 9711513 - 9711451
Alignment:
Q  89 agtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||| ||| ||||||| ||||| || |||||||||||||||||||||||| ||||||||||    
T  9711513 agtttgcatggaaattagagtattatgtttgtaaacgtattaaataagtgtaaaacaacttgt 9711451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 46883623 - 46883538
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataa----gtgtacaacaacttgtc 152  Q
    ||||||||||||||||  ||||||| |||||| | ||||||||||  |||||||||||||||||||    |||||||||||||||||    
T  46883623 atggaaattagggtagttgagtttgcatgaaagt-agggtattctatttgtaaacgtattaaataaataggtgtacaacaacttgtc 46883538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8397102 - 8397184
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||||||    
T  8397102 agagaaacacg-tttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattagggta 8397184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4942269 - 4942187
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| ||| |||||||||||    
T  4942269 agagaaacacg-tttaggggttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatgaaaattagggta 4942187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 11874825 - 11874860
Alignment:
Q  117 ttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||||||||||||||| |||||||||||||||||    
T  11874825 ttgtaaacgtattaaatatgtgtacaacaacttgtc 11874860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28813791 - 28813709
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||| ||||    
T  28813791 agagaaacacg-tttagggcttggtatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattaaggta 28813709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 47632024 - 47631987
Alignment:
Q  99 aaaattagggtattctggttgtaaacgtattaaataag 136  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  47632024 aaaattagggcattctgtttgtaaacgtattaaataag 47631987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 3990671 - 3990601
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  3990671 atggaaattagggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 3990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 31249141 - 31249222
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    ||||||||||||| | ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  31249141 atggaaattagggcaaccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgtacaacaatttgt 31249222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 38294755 - 38294832
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||| ||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||||||||||    
T  38294755 agtttgtatggaaattagggtagccgagtttgcatagaaattagggtattctgtttgtaaacgtattaaataagtgta 38294832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 30206370 - 30206290
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  30206370 ccaagtttacatgaaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtgta 30206290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 38294721 - 38294802
Alignment:
Q  3 agaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||||||||||  |||||| |||||| || ||||||||||||    
T  38294721 agaaacacggtttagggtttgctatatatagtcgagtttgtatggaaattagggtagccgagtttgcatagaaattagggta 38294802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 13797816 - 13797746
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||| ||||||||||||| ||| |||||||  ||||||| ||||||||||||||||||||||||    
T  13797816 atggaaattagtgtagccgagtttgcatggaaattagtatattctgtttgtaaacgtattaaataagtgta 13797746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 44014955 - 44014885
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||  ||||||||||||| ||||||||||    
T  44014955 atggaaattagggtagccaagtttgcatggaaattagggtattctatttgtaaacgtatttaataagtgta 44014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 9389354 - 9389282
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaa 132  Q
    ||||||||  ||| |||||| |||||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  9389354 ccaagtttacatgaaaattaaggtagccgagtttgcatgaaaattagggtattctatttgtaaacgtattaaa 9389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 23086251 - 23086188
Alignment:
Q  77 ttagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||| ||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||    
T  23086251 ttagggcagccgagtttgcatgaaaattagggtattatgtttgtaagcgtattaaataagtgta 23086188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 23960149 - 23960219
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||| ||| |||||| ||| ||||||||||||| || |||||||||||||||||| |||||    
T  23960149 atggaaattagggtggccaagtttgtatggaaattagggtattatgtttgtaaacgtattaaatacgtgta 23960219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 34948095 - 34948022
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaat 133  Q
    ||||||||  || |||||| ||||||||||||||| |||||||||| | ||||||| |||||||||||||||||    
T  34948095 ccaagtttacatagaaatttgggtagccgagtttgcatgaaaattatgatattctgtttgtaaacgtattaaat 34948022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 31249105 - 31249181
Alignment:
Q  8 cacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||  | | || |||||| |||||||||||||||    
T  31249105 cacggtttagggtttgctatatatagccgacttcgcatggaaattagggcaaccgagtttgcatggaaattagggta 31249181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 30437632 - 30437690
Alignment:
Q  82 gtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||| ||| |||||| |||||| || ||||||||||||||||||||||||    
T  30437632 gtagccgagtttgcatggaaattatggtattttgtttgtaaacgtattaaataagtgta 30437690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 27853226 - 27853265
Alignment:
Q  100 aaattagggtattctggttgtaaacgtattaaataagtgt 139  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  27853226 aaattagggtattctgtttgtaaacgtattaaataagtgt 27853265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 13461668 - 13461734
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaactt 149  Q
    |||||||||||  ||| ||||||||||||||   || |||| |||||||||||||||||||||||||    
T  13461668 tagccgagtttacatggaaattagggtattcattttttaaatgtattaaataagtgtacaacaactt 13461734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 31249040 - 31249096
Alignment:
Q  12 gtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttg 68  Q
    |||||||||||| |||||||||||||  ||||||||||||||  |||||| ||||||    
T  31249040 gtttagggtttgttatatatagccgattttgcatggaaattagggtagccgagtttg 31249096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 1276400 - 1276435
Alignment:
Q  105 agggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1276400 agggtattctgtttgtaaacgtattaaataagtgta 1276435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13461639 - 13461690
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    ||||||||| ||| ||||||||| |||||||||||||| || |||||||||||    
T  13461639 agagaaacatggtatagggtttg-tatatatagccgagtttacatggaaatta 13461690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 14683249 - 14683209
Alignment:
Q  100 aaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||| ||||||| |||||||| |||||||||||||||    
T  14683249 aaattaggatattctgtttgtaaacatattaaataagtgta 14683209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 44014955 - 44014915
Alignment:
Q  44 atggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||  ||||||||||||| |||||||||||||||    
T  44014955 atggaaattagggtagccaagtttgcatggaaattagggta 44014915  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 14854580 - 14854491
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgtc 152  Q
    |||||| ||| ||||||||||||||||||||| ||| |||||| |||||| || ||||||||||||||||||||||||||| ||||||||    
T  14854580 agtttgcatgaaaattagggtagccgagtttgcatggaaattaaggtattttgtttgtaaacgtattaaataagtgtacaataacttgtc 14854491  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 5398269 - 5398190
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtaca 142  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  5398269 agtttgcatagaaattagggtagccgagtttgcatggaaattagggtattctgtttgtaaacgtattaaataagtttaca 5398190  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 9487564 - 9487641
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagt 137  Q
    ||||||||  ||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||    
T  9487564 ccaagtttacatggaaattagggtagccgagtttgcatggaaattagggcattctgtttgtaaacgtattaaataagt 9487641  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5398305 - 5398222
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||| ||||||||||||||||||||||| |||| |||||| |||||||  |||||| |||||| |||||||||||||||    
T  5398305 agagaaacatggtttagggtttgctatatatagtcgagtttgcatagaaattagggtagccgagtttgcatggaaattagggta 5398222  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 7128077 - 7128007
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||||||||||||| ||  ||||||| |||||||| ||||||||||||||||||||||||    
T  7128077 atggaaattagggtagccgagtttgcatagaaattagagtattctgtttgtaaacgtattaaataagtgta 7128007  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 7779778 - 7779693
Alignment:
Q  63 agtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaactt 149  Q
    |||||| ||| |||||||||||| |||||||| ||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  7779778 agtttgcatgaaaattagggtagtcgagtttgcatggaaattagggtattctgtttgtaaaagtatt-aataagtgtacaacaactt 7779693  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 13104816 - 13104893
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagt 137  Q
    ||||||||  |||||||||||||||||||| |||| ||| |||||||||||||||| ||||||| |||||||||||||    
T  13104816 ccaagtttacatggaaattagggtagccgaatttgcatggaaattagggtattctgtttgtaaaagtattaaataagt 13104893  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 38110437 - 38110358
Alignment:
Q  61 caagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||  |||||||||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||| |||||    
T  38110437 caagtttacatggaaattagggtagccgagtctgcataaaaattatggtattctgtttgtaaacgtattaaatatgtgta 38110358  T

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Target: chr5; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 16305947 - 16305877
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||| ||||||||| ||| |||||| ||||||||| || |||||||||||||||||||||    
T  16305947 atggaaattagggtaaccgagtttgcatggaaattaaggtattctgtttataaacgtattaaataagtgta 16305877  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 23141126 - 23141052
Alignment:
Q  61 caagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataa 135  Q
    |||||||  ||||||||||| ||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||    
T  23141126 caagtttacatggaaattagagtagccgagtttgcatggaaattagtgtattctgtttgtaaacgtattaaataa 23141052  T

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Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 13034843 - 13034919
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagt 137  Q
    ||||||||  |||||||||||||||||||| |||| ||||||||||| |||||||| ||||||| |||||||||||||    
T  13034843 ccaagtttacatggaaattagggtagccgactttgcatgaaaattagagtattctgtttgtaaa-gtattaaataagt 13034919  T

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Target: chr5; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 41092474 - 41092554
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  || ||||||||||||| |||||||| ||| ||||||| | |||||| ||||||||||||||||||||||||    
T  41092474 ccaagtttacatagaaattagggtagtcgagtttgcatggaaattagagcattctgtttgtaaacgtattaaataagtgta 41092554  T

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Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 14854616 - 14854533
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||| |||||| |||||||||||||||| |||| ||||||| ||||||  |||||| |||||| |||||||||| ||||    
T  14854616 agagaaacatggtttacggtttgctatatatagtcgagtttgcatgaaaattagggtagccgagtttgcatggaaattaaggta 14854533  T

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Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 41511526 - 41511457
Alignment:
Q  70 atggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||| || |||| ||||||||||||||||    
T  41511526 atggaaattagggtagccgagtttgcatggaaatta-ggtattctgtttttaaaagtattaaataagtgta 41511457  T

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Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 7779812 - 7779731
Alignment:
Q  3 agaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||| ||||||  |||| | |||||| |||||||||||||||    
T  7779812 agaaacacggtttagagtttgttatatatatccgagtttgcatgaaaattagggtagtcgagtttgcatggaaattagggta 7779731  T

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Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 12441852 - 12441932
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||  |||| |||| ||| |||||||| |||| || ||||||||||||||||||||||||    
T  12441852 ccaagtttacatggaaattagggtgtccgaatttgcatggaaattaggatattatgtttgtaaacgtattaaataagtgta 12441932  T

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Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 38004245 - 38004325
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||| ||||| ||||||| ||| ||| ||||| |||||  ||||||||||||||||||||||||    
T  38004245 ccaagtttacatggaaattagtgtagctgagtttgcatggaaagtagggcattctaattgtaaacgtattaaataagtgta 38004325  T

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Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3433302 - 3433235
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttg 68  Q
    |||||||||||||||| ||||||| ||||||| ||||| ||||||||| |||| ||||||| ||||||    
T  3433302 agagaaacacggtttatggtttgcaatatatacccgagtttgcatggacattagagtagccgagtttg 3433235  T

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Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 19322607 - 19322567
Alignment:
Q  100 aaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  19322607 aaattagggtattctgtttgtaaacgtattaaataagtgta 19322567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14854710 - 14854644
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagttt 67  Q
    ||||||| | ||||||||||||||||||||| |||||| ||||||| ||||||  |||||| |||||    
T  14854710 agagaaatatggtttagggtttgctatatatcgccgagtttgcatgaaaattagggtagccgagttt 14854644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 19122762 - 19122705
Alignment:
Q  82 gtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||| ||| ||||||||||||| || |||| |||||||||||||||||||    
T  19122762 gtagccgagtttgcatggaaattagggtattttgtttgt-aacgtattaaataagtgta 19122705  T

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Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9487532 - 9487612
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattaggg 82  Q
    ||||||||||| ||||||| ||| |||||||| || || || |||||||||||  |||||| |||||| |||||||||||||    
T  9487532 agagaaacacg-tttagggcttgatatatataaccaagtttacatggaaattagggtagccgagtttgcatggaaattaggg 9487612  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 3433237 - 3433203
Alignment:
Q  117 ttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||||||||| ||||||||||||||||||||||    
T  3433237 ttgtaaacgtatcaaataagtgtacaacaacttgt 3433203  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31486587 - 31486639
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaatta 53  Q
    ||||||||||||||||||| ||| ||||||| ||| || || |||||||||||    
T  31486587 agagaaacacggtttagggcttggtatatatcgccaagtttacatggaaatta 31486639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 13284 - 13204
Alignment:
Q  60 ccaagtttgaatggaaattagggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||  ||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  13284 ccaagtttacatggaaattagggtatctgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaataagtgta 13204  T

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Target: scaffold0090 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 12274 - 12342
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaacaacttgt 151  Q
    |||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  12274 tagccgagtttgcatggaaattagggtattatgtttgtaaacgtattaaataagtgtacaacaagttgt 12342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12243 - 12296
Alignment:
Q  1 agagaaacacggtttag-ggtttgctatatatagccgaggttgcatggaaatta 53  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  12243 agagaaacacggtttaaaggtttgctatatatagccgagtttgcatggaaatta 12296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 103007 - 102947
Alignment:
Q  80 gggtagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgta 140  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  103007 gggtagccgagtttgcatgaaaattagggtattctgtttgtaaacgtattaaatacgtgta 102947  T

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Target: scaffold0001 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 196271 - 196331
Alignment:
Q  83 tagccgagtttgaatgaaaattagggtattctggttgtaaacgtattaaataagtgtacaa 143  Q
    |||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||    
T  196271 tagccgagtttacatgaaaattagggtattatgtttgtaaacgtattaaataagtgtacaa 196331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 196215 - 196298
Alignment:
Q  1 agagaaacacggtttagggtttgctatatatagccgaggttgcatggaaattatagtagccaagtttgaatggaaattagggta 84  Q
    |||||||||||||||||||||| ||||||||||| ||| || | || | |||||  ||||| |||||  ||| |||||||||||    
T  196215 agagaaacacggtttagggttttctatatatagctgagttttcttgtatattatgatagccgagtttacatgaaaattagggta 196298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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