View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_low_8 (Length: 563)

Name: NF15449_low_8
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_low_8
NF15449_low_8
[»] chr2 (4 HSPs)
chr2 (28-531)||(20168883-20169386)
chr2 (28-531)||(20358900-20359401)
chr2 (28-531)||(20144388-20144891)
chr2 (335-415)||(20141799-20141879)
[»] chr3 (19 HSPs)
chr3 (233-531)||(5160046-5160343)
chr3 (233-529)||(5156018-5156314)
chr3 (401-516)||(51942916-51943031)
chr3 (241-531)||(46479561-46479851)
chr3 (232-375)||(51943817-51943960)
chr3 (233-516)||(46473715-46473998)
chr3 (233-375)||(46483975-46484117)
chr3 (27-119)||(5160445-5160537)
chr3 (67-125)||(45883635-45883693)
chr3 (409-531)||(45883967-45884089)
chr3 (410-531)||(45902725-45902846)
chr3 (32-117)||(46236661-46236746)
chr3 (158-316)||(47414174-47414332)
chr3 (481-531)||(46526729-46526779)
chr3 (478-531)||(46497716-46497769)
chr3 (32-105)||(47397175-47397248)
chr3 (231-288)||(45902968-45903025)
chr3 (67-119)||(5156416-5156468)
chr3 (40-120)||(47414068-47414148)
[»] chr8 (4 HSPs)
chr8 (411-531)||(9692952-9693072)
chr8 (233-375)||(9692774-9692916)
chr8 (67-129)||(9675598-9675660)
chr8 (67-129)||(9692620-9692682)
[»] chr4 (2 HSPs)
chr4 (477-531)||(35162210-35162264)
chr4 (233-315)||(35162426-35162508)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 28 - 531
Target Start/End: Original strand, 20168883 - 20169386
Alignment:
Q  28 gaatggtaaaatcactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgt 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  20168883 gaatggtaaaatcactcctaacccctttagggtatcactagtttcaagcccaaatgaaacattgaatctaggaattttaaagtcacctactttcacttgt 20168982  T
Q  128 ttcaattgatcataaagactaagcttttcatgtagtaattcatattttgaagtcatcttctcaattaaagctggcagtccatcttttgcgtttggcnnnn 227  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        
T  20168983 ttcaattgatcataaagactaagcttttcgtgtagtaattcatattttgaagtcatcttctcaactaaagctggcagtccatcttttgcgtttggcaaaa 20169082  T
Q  228 nnntatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgct 327  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20169083 aaatatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaattgcatcttcttgct 20169182  T
Q  328 taccataaaaggaaccttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccatgctcctataaag 427  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20169183 taccatgaaaggaaccttgactgagtttccattcaaaagatgaaaatcacagttttctgttttggaaaggtcgaacttctcattccatgctcctataaag 20169282  T
Q  428 tacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccataaat 527  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20169283 tacaatgcattagcaaagatgacgctggctgatctatcaaccggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccataaat 20169382  T
Q  528 tcac 531  Q
    ||||    
T  20169383 tcac 20169386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 28 - 531
Target Start/End: Complemental strand, 20359401 - 20358900
Alignment:
Q  28 gaatggtaaaatcactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgt 127  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20359401 gaatggtaaagtcactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgt 20359302  T
Q  128 ttcaattgatcataaagactaagcttttcatgtagtaattcatattttgaagtcatcttctcaattaaagctggcagtccatcttttgcgtttggcnnnn 227  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||        
T  20359301 ttcaattgatcataaagactaagcttttcgtgtagtaattcatatttagaagtcatcttctcaactaaagctggcagtccatcttttgcgtttggcaaaa 20359202  T
Q  228 nnntatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgct 327  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20359201 aaatatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgct 20359102  T
Q  328 taccataaaaggaaccttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccatgctcctataaag 427  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  20359101 taccatgaaaggaaccttgactgagtttccattcaaaagatgaaaatcacag--ttctgttttggaaaggtcgaacttctcattccatgctcctataaag 20359004  T
Q  428 tacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccataaat 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20359003 tacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttcagaccataaat 20358904  T
Q  528 tcac 531  Q
    ||||    
T  20358903 tcac 20358900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 28 - 531
Target Start/End: Complemental strand, 20144891 - 20144388
Alignment:
Q  28 gaatggtaaaatcactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgt 127  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20144891 gaatggtaaaaccactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgt 20144792  T
Q  128 ttcaattgatcataaagactaagcttttcatgtagtaattcatattttgaagtcatcttctcaattaaagctggcagtccatcttttgcgtttggcnnnn 227  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||        
T  20144791 ttcaattgatcataaagactaagattttcatgtagtaattcatatttagaagtcatcttctcaactaaagctggcagtccatcttttgcgttaggcaaaa 20144692  T
Q  228 nnntatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgct 327  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20144691 aaatatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgct 20144592  T
Q  328 taccataaaaggaaccttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccatgctcctataaag 427  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20144591 taccatgaaaggaaccttgactgagtttccattcaaaagatgaaaatcactgttttctgtttttgaaaggtcgaacttctcattccatgctcctataaag 20144492  T
Q  428 tacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccataaat 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20144491 tacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccatagat 20144392  T
Q  528 tcac 531  Q
    ||||    
T  20144391 tcac 20144388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 20141799 - 20141879
Alignment:
Q  335 aaaggaaccttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccat 415  Q
    |||||||||||||| ||| ||||||||||||| ||||||||   ||||||| |||| |||||||| ||||| |||||||||    
T  20141799 aaaggaaccttgacggagcttccattcaaaaggtgaaaatcattgttttctatttttgaaaggtcaaacttgtcattccat 20141879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 233 - 531
Target Start/End: Complemental strand, 5160343 - 5160046
Alignment:
Q  233 tacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgcttacca 332  Q
    |||||||||||| ||||| ||||||  ||||| ||||| |||||||||||||||||| |  ||||||||||||||||||||||  ||| || |||   ||    
T  5160343 tacatagagaatggacgcttatctttgcctttcttatacggaagacgaagaactttaaagtcgtcataagcttcaataaactgattctcctcgctggtca 5160244  T
Q  333 taaaaggaaccttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccatgctcctataaagtacaa 432  Q
    | || ||||||||||||||| | ||||||||||| ||||||||  ||| ||  ||||| ||||  || ||||| ||| ||||||||||| ||||||| |     
T  5160243 tgaagggaaccttgactgagct-ccattcaaaaggtgaaaatcatagtctttcgttttcgaaacatcaaacttatcactccatgctcctttaaagtagag 5160145  T
Q  433 tgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccataaattcac 531  Q
    |||||||||||||||||  |||| | | |||||||||| || | |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  5160144 tgcattagcaaagatgagtctggttaacctatcaactgatcttagaggaagaagttctttaataaggccatttgtctctttttcagcccataaattcac 5160046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 233 - 529
Target Start/End: Complemental strand, 5156314 - 5156018
Alignment:
Q  233 tacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgcttacca 332  Q
    |||||||||||| ||||| ||||||  ||||||||||| |||||||||||||||||| | ||  |||||||||||||||||||  ||| || |||   ||    
T  5156314 tacatagagaatcgacgcttatctttgccttttttatacggaagacgaagaactttaaagccaccataagcttcaataaactgattctcctcgctggtca 5156215  T
Q  333 taaaaggaaccttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccatgctcctataaagtacaa 432  Q
    | || ||||||||||| ||| | ||||||||||| ||||||||  ||| ||  |||||  |||  || ||||||||| ||||||||||| ||||||| |     
T  5156214 tgaagggaaccttgaccgagctgccattcaaaaggtgaaaatcatagtctttcgttttcaaaacatcaaacttctcactccatgctcctttaaagtagag 5156115  T
Q  433 tgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccataaattc 529  Q
    ||||||||||||||||| || || | | |||||||||| || | |||||||||||||||||||||||||| ||||||||||||| | ||||||||||    
T  5156114 tgcattagcaaagatgaggcgggttaagctatcaactgatcttggaggaagaagttctttaataaggccatttgtctctttttcagcccataaattc 5156018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 401 - 516
Target Start/End: Complemental strand, 51943031 - 51942916
Alignment:
Q  401 aacttctcattccatgctcctataaagtacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggc 500  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||| ||| | | | |||||||||| |||| |||||| |||||||||||||||||    
T  51943031 aacttctcattccatgctcctctaaagtacaacgcattagcaaagatgaggctagttaagctatcaactgatcctggaggaataagttctttaataaggc 51942932  T
Q  501 caattgtctctttttc 516  Q
    || |||||||||||||    
T  51942931 catttgtctctttttc 51942916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 241 - 531
Target Start/End: Complemental strand, 46479851 - 46479561
Alignment:
Q  241 gaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgcttaccataaaagga 340  Q
    |||||||||| ||||||  ||||  |||||||||||||  ||||||||| |||| ||| |||||  |||||||||| ||||||||||   ||| || |||    
T  46479851 gaattgacgcttatcttcgccttgcttataaggaagaccgagaactttaaaaccatcaaaagctctaataaactgcttcttcttgctggtcatgaaggga 46479752  T
Q  341 accttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccatgctcctataaagtacaatgcattag 440  Q
    |||||||||| | | ||||||||||| ||||| ||| ||| ||| ||||| |||   || ||||| |||||||| |||||| | ||||| | |||||| |    
T  46479751 accttgactgggctaccattcaaaaggtgaaactcgtagtcttccgtttttgaagcatcaaacttatcattccacgctcctttgaagtatagtgcattgg 46479652  T
Q  441 caaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttccgaccataaattcac 531  Q
    |||||||||  | || ||   | |  || |  ||  |||||||||||||||||||||||||| ||||||||||||| | |||| |||||||    
T  46479651 caaagatgagccgggttgcattgttgaccgacccaagaggaagaagttctttaataaggccatttgtctctttttcagcccatgaattcac 46479561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 51943960 - 51943817
Alignment:
Q  232 atacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgcttacc 331  Q
    ||||||||||||||| ||| |||||| |||||| |||||||||||| ||||||||||| || | |||||| |||||||||||||| |||| |||||   |    
T  51943960 atacatagagaattggcgcttatcttcacctttcttataaggaagatgaagaactttaaaatcatcataaacttcaataaactgcttcttattgctggtc 51943861  T
Q  332 ataaaaggaaccttgactgagtttccattcaaaagatgaaaatc 375  Q
    || || ||||||||||||||| | ||||| | ||| ||||||||    
T  51943860 atgaagggaaccttgactgagctaccatttagaaggtgaaaatc 51943817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 516
Target Start/End: Complemental strand, 46473998 - 46473715
Alignment:
Q  233 tacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgcttacca 332  Q
    ||||||| |||  ||||| ||||||  ||||  ||||||||||||| |||||||||| |||| ||| |||||  |||||||||| ||||||||||   ||    
T  46473998 tacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgcttcttcttgctagtca 46473899  T
Q  333 taaaaggaaccttgactgagtttccattcaaaagatgaaaatcgcagttttctgttttggaaaggtcgaacttctcattccatgctcctataaagtacaa 432  Q
    |||| | |||||| |||||| | ||||| | ||| | ||||||  ||| || |||| | |||   || | ||||| |||||||| |||| |||| |||||    
T  46473898 taaaggaaaccttaactgagctgccattgagaaggtaaaaatcatagtcttttgttgttgaagcatcaatcttctgattccatgatcctttaaaatacaa 46473799  T
Q  433 tgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctctttttc 516  Q
    |||||||||||||| ||  |||| | |  | |  | ||  ||| ||||||||| |||||||||||| ||| |||||||||||||    
T  46473798 tgcattagcaaagacgagtctggataagttgttgattgacccttgaggaagaatttctttaataagaccatttgtctctttttc 46473715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 46484117 - 46483975
Alignment:
Q  233 tacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatcttcttgcttacca 332  Q
    ||||||| |||  ||||| ||||||  ||||  ||||||||||||| |||||||||| |||| ||| |||||  |||||||||| ||||||||||   ||    
T  46484117 tacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgcttcttcttgctagtca 46484018  T
Q  333 taaaaggaaccttgactgagtttccattcaaaagatgaaaatc 375  Q
    |||| ||||||||||||||| | ||||| | ||| ||||||||    
T  46484017 taaagggaaccttgactgagctgccattgagaaggtgaaaatc 46483975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 5160537 - 5160445
Alignment:
Q  27 tgaatggtaaaatcactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactt 119  Q
    |||| |||||| |||||||||||||||| ||  |||||  |||||||||| |||||||||  ||||||||||||||| | |||||||||||||    
T  5160537 tgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagctcaaatgaaattttgaatcttggaattctgaattcacctactt 5160445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 45883635 - 45883693
Alignment:
Q  67 agtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcactt 125  Q
    ||||||||||||||||||||||||||||||||||||| | || ||||||||||| ||||    
T  45883635 agtttcaagcccaaatgaaacattgaatcttggaattctgaagtcacctactttgactt 45883693  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 531
Target Start/End: Original strand, 45883967 - 45884089
Alignment:
Q  409 attccatgctcctataaagtacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtc 508  Q
    ||||||||||||  |||||||||||||||||||||| ||||  |||| | |  | | |||||  ||| ||| ||||| |||||||||||| ||| |||||    
T  45883967 attccatgctcccttaaagtacaatgcattagcaaatatgagtctggttaagttgttaactgaccctggagaaagaatttctttaataagaccatttgtc 45884066  T
Q  509 tctttttccgaccataaattcac 531  Q
    |||||||| | ||||||||||||    
T  45884067 tctttttcagcccataaattcac 45884089  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 531
Target Start/End: Complemental strand, 45902846 - 45902725
Alignment:
Q  410 ttccatgctcctataaagtacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtct 509  Q
    |||||||||||| |||| |||||||| |||||||||||||  |||| | || | |  || |  ||||||  ||||| ||| |||||||||||| ||||||    
T  45902846 ttccatgctcctttaaaatacaatgcgttagcaaagatgagtctggttaatttgttgaccgaccctcgataaagaaattcattaataaggccatttgtct 45902747  T
Q  510 ctttttccgaccataaattcac 531  Q
    ||||||| | ||||||||||||    
T  45902746 ctttttcagcccataaattcac 45902725  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 46236661 - 46236746
Alignment:
Q  32 ggtaaaatcactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctac 117  Q
    ||||||||||||||||||||||| |  |||| | |||||||||  ||||| |||| ||||||||||||||| || || ||||||||    
T  46236661 ggtaaaatcactcctaactccttcatcgtattagtagtttcaattccaaacgaaatattgaatcttggaatcttgaactcacctac 46236746  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 316
Target Start/End: Original strand, 47414174 - 47414332
Alignment:
Q  158 tgtagtaattcatattttgaagtcatcttctcaattaaagctggcagtccatcttttgcgtttggcnnnnnnntatacatagagaattgacgcgtatctt 257  Q
    |||||||| ||| |||  |||| || ||||||||  ||||||| |||||||||| ||| ||||||        | |||||||||||||  ||||||||||    
T  47414174 tgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgtgtttggaagaaaaatgtacatagagaatttccgcgtatctt 47414273  T
Q  258 gaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgc 316  Q
      ||||| ||||||||||| | |||||||||| || | ||| ||||| |||||||||||    
T  47414274 ctcctttattataaggaaggcaaagaactttaaaatcatcaaaagctccaataaactgc 47414332  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Original strand, 46526729 - 46526779
Alignment:
Q  481 aagaagttctttaataaggccaattgtctctttttccgaccataaattcac 531  Q
    |||||||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  46526729 aagaagttctctaataaggccatttgtctctttttcagcccataaattcac 46526779  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 478 - 531
Target Start/End: Complemental strand, 46497769 - 46497716
Alignment:
Q  478 aggaagaagttctttaataaggccaattgtctctttttccgaccataaattcac 531  Q
    ||||||||||||||||||||| ||| |||||||| |||| | ||||||||||||    
T  46497769 aggaagaagttctttaataagaccatttgtctctctttcagcccataaattcac 46497716  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 47397175 - 47397248
Alignment:
Q  32 ggtaaaatcactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaatttt 105  Q
    ||||||||||||||||||||||| |   |||||  ||||||||||| || |||||  |||||||||||||||||    
T  47397175 ggtaaaatcactcctaactccttcaacatatcagaagtttcaagccaaattgaaaatttgaatcttggaatttt 47397248  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 45903025 - 45902968
Alignment:
Q  231 tatacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaacttt 288  Q
    |||||||||||||||||||| ||||||  ||||  | ||||||||||||||| |||||    
T  45903025 tatacatagagaattgacgcttatcttctccttgctcataaggaagacgaagtacttt 45902968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 5156468 - 5156416
Alignment:
Q  67 agtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactt 119  Q
    |||||||||| |||||||||  ||||||||||||||| | |||||| ||||||    
T  5156468 agtttcaagctcaaatgaaattttgaatcttggaattctgaattcaactactt 5156416  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 47414068 - 47414148
Alignment:
Q  40 cactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctacttt 120  Q
    ||||||||||||||| ||| |||||  | ||||  |  |||||||||| ||||||||||||||| | || |||||||||||    
T  47414068 cactcctaactccttcaggatatcagaaatttcttgttcaaatgaaaccttgaatcttggaattctgaagtcacctacttt 47414148  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 411 - 531
Target Start/End: Original strand, 9692952 - 9693072
Alignment:
Q  411 tccatgctcctataaagtacaatgcattagcaaagatgacgctggctgatctatcaactggtcctcgaggaagaagttctttaataaggccaattgtctc 510  Q
    ||||||||||| |||| ||||||||||||||||||||||  |||| | | || |||||||   || ||||||||| ||||||||||||||||  ||||||    
T  9692952 tccatgctcctttaaaatacaatgcattagcaaagatgagtctggttaagctgtcaactgacgcttgaggaagaatttctttaataaggccatatgtctc 9693051  T
Q  511 tttttccgaccataaattcac 531  Q
    |||||| | ||||||||||||    
T  9693052 tttttcagcccataaattcac 9693072  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 9692774 - 9692916
Alignment:
Q  233 tacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgcatc-ttcttgcttacc 331  Q
    |||||||||||||| ||| ||| ||  ||||  |||||||||||||||||||||||| |||| ||| |||||  ||||||||| |||    |||||   |    
T  9692774 tacatagagaattgtcgcttattttttccttaattataaggaagacgaagaactttaaaaccatcaaaagctctaataaactg-atcaaggttgctgctc 9692872  T
Q  332 ataaaaggaaccttgactgagtttccattcaaaagatgaaaatc 375  Q
    ||||||||||||||||||||| | ||||||  ||| ||||||||    
T  9692873 ataaaaggaaccttgactgagctgccattcggaaggtgaaaatc 9692916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 9675598 - 9675660
Alignment:
Q  67 agtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgttt 129  Q
    ||||||||||||||||||||  ||||||||||||||||  || | ||||||||||||| ||||    
T  9675598 agtttcaagcccaaatgaaaatttgaatcttggaatttggaaattacctactttcactcgttt 9675660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 9692620 - 9692682
Alignment:
Q  67 agtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgttt 129  Q
    ||||||||||||||||||||  ||||||||||||||||  |||||||||| | ||||| ||||    
T  9692620 agtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctattctcactagttt 9692682  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 477 - 531
Target Start/End: Complemental strand, 35162264 - 35162210
Alignment:
Q  477 gaggaagaagttctttaataaggccaattgtctctttttccgaccataaattcac 531  Q
    |||||||||||||||||||||||||| |||| |||||||| | ||||||||||||    
T  35162264 gaggaagaagttctttaataaggccatttgtttctttttcagcccataaattcac 35162210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 35162508 - 35162426
Alignment:
Q  233 tacatagagaattgacgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactg 315  Q
    |||||||||||||  |||  |||||  ||||  |||||||||||||||||||||||| |||| ||| |||||  |||||||||    
T  35162508 tacatagagaatttccgctcatcttttccttgcttataaggaagacgaagaactttaaaaccatcaaaagctctaataaactg 35162426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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