View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_low_9 (Length: 557)

Name: NF15449_low_9
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_low_9
NF15449_low_9
[»] chr1 (10 HSPs)
chr1 (183-554)||(15998514-15998885)
chr1 (1-67)||(15998883-15998949)
chr1 (182-269)||(15591238-15591324)
chr1 (183-269)||(16008992-16009077)
chr1 (199-254)||(15612793-15612848)
chr1 (184-226)||(10129971-10130013)
chr1 (184-262)||(19490084-19490162)
chr1 (181-226)||(4260440-4260485)
chr1 (181-226)||(4264062-4264107)
chr1 (183-224)||(15603304-15603345)
[»] chr6 (11 HSPs)
chr6 (184-259)||(29946271-29946346)
chr6 (186-266)||(30154336-30154416)
chr6 (187-250)||(24730692-24730755)
chr6 (184-226)||(29882269-29882311)
chr6 (184-226)||(29909425-29909467)
chr6 (184-226)||(29929107-29929149)
chr6 (181-250)||(29887128-29887197)
chr6 (181-226)||(30149358-30149403)
chr6 (186-250)||(21160724-21160788)
chr6 (186-226)||(30053263-30053303)
chr6 (181-261)||(30060250-30060330)
[»] scaffold0237 (1 HSPs)
scaffold0237 (181-226)||(22174-22219)
[»] chr3 (2 HSPs)
chr3 (184-259)||(24219325-24219400)
chr3 (186-226)||(24226656-24226696)
[»] chr2 (1 HSPs)
chr2 (184-250)||(15062975-15063041)
[»] scaffold0086 (1 HSPs)
scaffold0086 (181-226)||(31428-31473)
[»] scaffold0572 (1 HSPs)
scaffold0572 (419-459)||(3338-3378)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 183 - 554
Target Start/End: Complemental strand, 15998885 - 15998514
Alignment:
Q  183 atatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaatttgattctttatgcaataat 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998885 atatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaatttgattctttatgcaataat 15998786  T
Q  283 aacgtacaacaatattatagatgacttgtgcaaatgagagaaaatctgttatgcgtggaagcttgttggtaagatgcataatggaggtcaacaaactatt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998785 aacgtacaacaatattatagatgacttgtgcaaatgagagaaaatctgttatgcgtggaagcttgttggtaagatgcataatggaggtcaacaaactatt 15998686  T
Q  383 gtcatcgtttacaattctttattacatactttgcgcaaaattaaagaccaaagcattcaactggatttgtacacataatatgcttggtttgtcaaaggtg 482  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15998685 gtcatcgtttacaattctttattacatactttgtgcaaaattaaagaccaaggcattcaaccggatttgtacacataatatgcttggtttgtcaaaggtg 15998586  T
Q  483 taagacttaaataagttttttgagaacttttgattaaagatgtcgtgaagtatatgactatgatcaatgggg 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15998585 taagacttaaataagttttttgagaacttttgattaaagatgtcgtgaagtatatgactatgatcaatgggg 15998514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15998949 - 15998883
Alignment:
Q  1 aaatgtttatagtatattgtgtagagtgtttttgcatcttgaaatggtgaaagaagctgatgtgata 67  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  15998949 aaatgtttatagtatattgtgcagtgtgtttttgcatcttgaaatggtgaaagaagctgatgtgata 15998883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 15591238 - 15591324
Alignment:
Q  182 aatatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaatttgattc 269  Q
    |||| ||||||||||| |||||||||||||||||||||||||||| |  ||||| |    ||||||||||||||||||||| ||||||    
T  15591238 aataccatgattaatggattatgtaagattaaaatagtggatgaagttatgaat-ttgaggaagaaatgtattccaaaaatatgattc 15591324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 16009077 - 16008992
Alignment:
Q  183 atatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaatttgattc 269  Q
    ||||||||||||||| ||||||||||||||| || || ||||||    ||||| |||||| ||||||||||||||||||| ||||||    
T  16009077 atatcatgattaatggattatgtaagattaacattgtagatgaagctttgaatctctttg-agaaatgtattccaaaaatatgattc 16008992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 15612793 - 15612848
Alignment:
Q  199 attatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtatt 254  Q
    |||||||||||||||||| ||  |||||| | ||||| ||||||||||||||||||    
T  15612793 attatgtaagattaaaatggtatatgaaaccatgaatctctttgaagaaatgtatt 15612848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 10129971 - 10130013
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    |||||||||||||| ||| |||||||||||||| |||||||||    
T  10129971 tatcatgattaatggattttgtaagattaaaatggtggatgaa 10130013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 19490084 - 19490162
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaat 262  Q
    |||||||||||||| |||||||||||| |||||  ||||||||   || | | |||||||||||||| |||||| ||||    
T  19490084 tatcatgattaatggattatgtaagatgaaaatgttggatgaagcggtaagtctctttgaagaaatgcattccacaaat 19490162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 4260485 - 4260440
Alignment:
Q  181 caatatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    ||||||||||||||||||||| ||||| || ||||| |||||||||    
T  4260485 caatatcatgattaatgaattttgtaaaatgaaaatggtggatgaa 4260440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 4264107 - 4264062
Alignment:
Q  181 caatatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    ||||||||||||||||||||| ||||| || ||||| |||||||||    
T  4264107 caatatcatgattaatgaattttgtaaaatgaaaatggtggatgaa 4264062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 15603304 - 15603345
Alignment:
Q  183 atatcatgattaatgaattatgtaagattaaaatagtggatg 224  Q
    |||| |||||||||| ||||||||||||||||||||| ||||    
T  15603304 atatgatgattaatggattatgtaagattaaaatagttgatg 15603345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 29946271 - 29946346
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaa 259  Q
    |||||||||||||| ||| |||||||||||||| |||||||||  | ||||| |||||||||||||| ||| ||||    
T  29946271 tatcatgattaatggattttgtaagattaaaatggtggatgaagccatgaatctctttgaagaaatgcattgcaaa 29946346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 30154336 - 30154416
Alignment:
Q  186 tcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaatttga 266  Q
    |||||||||||| |||||||||| ||||||| |||||||||   |||| | ||||| |||||||| ||||||||| |||||    
T  30154336 tcatgattaatggattatgtaaggttaaaatggtggatgaagctgtgattctctttaaagaaatgcattccaaaagtttga 30154416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 24730692 - 24730755
Alignment:
Q  187 catgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatg 250  Q
    ||||||||||| |||||||||||||||||| |||||||||   || ||| ||||||||||||||    
T  24730692 catgattaatggattatgtaagattaaaatggtggatgaagctgtaaatctctttgaagaaatg 24730755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 29882269 - 29882311
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    |||||||||||||| ||| |||||||||||||| |||||||||    
T  29882269 tatcatgattaatggattttgtaagattaaaatggtggatgaa 29882311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 29909425 - 29909467
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    |||||||||||||| ||| |||||||||||||| |||||||||    
T  29909425 tatcatgattaatggattttgtaagattaaaatggtggatgaa 29909467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 29929107 - 29929149
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    |||||||||||||| ||| |||||||||||||| |||||||||    
T  29929107 tatcatgattaatggattttgtaagattaaaatggtggatgaa 29929149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 29887128 - 29887197
Alignment:
Q  181 caatatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatg 250  Q
    ||||||||||||||||| ||| ||||||||||||||    ||||||  | ||||| ||||||||||||||    
T  29887128 caatatcatgattaatggattttgtaagattaaaatgaccgatgaagccatgaatctctttgaagaaatg 29887197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 30149358 - 30149403
Alignment:
Q  181 caatatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    ||||||||||||||| | ||||||||||| |||||| |||||||||    
T  30149358 caatatcatgattaacggattatgtaagaataaaatggtggatgaa 30149403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 21160788 - 21160724
Alignment:
Q  186 tcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatg 250  Q
    |||||||||||| | ||||||||| |||||| |||||||||  ||| ||| ||||| ||||||||    
T  21160788 tcatgattaatggactatgtaagaataaaatggtggatgaagccgttaatctctttaaagaaatg 21160724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 30053263 - 30053303
Alignment:
Q  186 tcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    |||||||||||| ||||||||||| |||||| |||||||||    
T  30053263 tcatgattaatggattatgtaagaataaaatggtggatgaa 30053303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 30060330 - 30060250
Alignment:
Q  181 caatatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaaaa 261  Q
    |||||| ||||||||||  || |||||||||||||  || ||||||  | ||||| |||||||||||||| ||| ||||||    
T  30060330 caatataatgattaatgggttttgtaagattaaaaaggtcgatgaagccatgaatctctttgaagaaatgcattgcaaaaa 30060250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 22174 - 22219
Alignment:
Q  181 caatatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||||    
T  22174 caatatcatgattaatggattttgtaagattaaaatggtggatgaa 22219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 24219400 - 24219325
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatgtattccaaa 259  Q
    ||||||||||| || ||| |||||||||||||| |||||||||  | ||||  |||||||||||||| ||| ||||    
T  24219400 tatcatgattagtggattttgtaagattaaaatggtggatgaagccatgaaactctttgaagaaatgcattgcaaa 24219325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 24226656 - 24226696
Alignment:
Q  186 tcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    |||||||||||| ||||||||||| |||||| |||||||||    
T  24226656 tcatgattaatggattatgtaagaataaaatggtggatgaa 24226696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 15063041 - 15062975
Alignment:
Q  184 tatcatgattaatgaattatgtaagattaaaatagtggatgaaatcgtgaatgtctttgaagaaatg 250  Q
    |||||||||||||| ||| |||||||||||||| || ||||||  | ||||  ||||||||||||||    
T  15063041 tatcatgattaatggattttgtaagattaaaatggtagatgaagccatgaagctctttgaagaaatg 15062975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 31473 - 31428
Alignment:
Q  181 caatatcatgattaatgaattatgtaagattaaaatagtggatgaa 226  Q
    ||||||||| ||||||| |||||||||||||||||| || ||||||    
T  31473 caatatcattattaatggattatgtaagattaaaattgttgatgaa 31428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 3338 - 3378
Alignment:
Q  419 aaaattaaagaccaaagcattcaactggatttgtacacata 459  Q
    ||||||||||||||| |||||||||| ||| ||||||||||    
T  3338 aaaattaaagaccaaggcattcaactagatatgtacacata 3378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University