View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1544_high_1 (Length: 283)
Name: NF1544_high_1
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1544_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 4713086 - 4712825
Alignment:
| Q |
7 |
tccaagaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4713086 |
tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
4712987 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712986 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
4712887 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaact |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712886 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaact |
4712825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 4847041 - 4846783
Alignment:
| Q |
7 |
tccaagaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| | |
|
|
| T |
4847041 |
tccaacaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
4846942 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
4846941 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatctctgc |
4846842 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagca |
265 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4846841 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagca |
4846783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 4698204 - 4697949
Alignment:
| Q |
13 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
112 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||| | || |||||||| | |||||||| | |||| |
|
|
| T |
4698204 |
aatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctcgagtc |
4698105 |
T |
|
| Q |
113 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
212 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| |||| |
|
|
| T |
4698104 |
tcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttc |
4698005 |
T |
|
| Q |
213 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaact |
268 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
4698004 |
gttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaact |
4697949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 4784855 - 4784594
Alignment:
| Q |
7 |
tccaagaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| || |||| ||||||||| | |
|
|
| T |
4784855 |
tccaacaatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatct |
4784756 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
||| || || ||||| ||||||||| |||||| || ||||| |||| ||||| ||| ||||| ||| ||| ||||||||||| |||||||||||| | |
|
|
| T |
4784755 |
caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac |
4784656 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaact |
268 |
Q |
| |
|
| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4784655 |
accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaact |
4784594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 4862985 - 4863241
Alignment:
| Q |
7 |
tccaagaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||||||||||| ||||| |||| ||||||||||||| || ||||||||||| | || ||||| | |
|
|
| T |
4862985 |
tccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatct |
4863084 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
|||||| | ||||| |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| ||||||||||| | |
|
|
| T |
4863085 |
caagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctc |
4863184 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagag |
263 |
Q |
| |
|
| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
4863185 |
accttcgttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagag |
4863241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 4817284 - 4817023
Alignment:
| Q |
7 |
tccaagaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
106 |
Q |
| |
|
||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||| |||| | ||||||||| |||| || |||| ||||||||| | |
|
|
| T |
4817284 |
tccaacaatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatct |
4817185 |
T |
|
| Q |
107 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
206 |
Q |
| |
|
||| || || ||||| ||||||||| |||||| || ||||| |||| ||||| ||| ||||| ||| ||| ||||||||||| |||||||||||| | |
|
|
| T |
4817184 |
caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac |
4817085 |
T |
|
| Q |
207 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaact |
268 |
Q |
| |
|
| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4817084 |
accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaact |
4817023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 4666208 - 4666290
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaa |
266 |
Q |
| |
|
|||||||| ||||||||||||| || |||||||||||||| | ||||| || |||||||| || ||||||||||||||||| |
|
|
| T |
4666208 |
tcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaa |
4666290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 4630182 - 4630266
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaact |
268 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||||| | ||||| || |||||||| || |||||||| |||||||||| |
|
|
| T |
4630182 |
tcataaaccagaatcatctctgtgttgtcattgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaact |
4630266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 4642977 - 4643061
Alignment:
| Q |
184 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaact |
268 |
Q |
| |
|
|||||||| | ||||||||||| || || ||||||||||| | |||||| || |||||||| || |||||||| |||||||||| |
|
|
| T |
4642977 |
tcataaaccaaaatcatctctgtgtcatcgttgcaatatcccacgagggacaccaagtgaatgtggcgaagctgggagagcaact |
4643061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 268
Target Start/End: Original strand, 4652751 - 4652877
Alignment:
| Q |
142 |
gaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagt |
241 |
Q |
| |
|
|||||||| |||| |||| ||||| || |||| ||| || |||||||| | |||||| |||| || |||||||||||||| | |||||| || |||| |
|
|
| T |
4652751 |
gaaccataaagatactcacacagagtaccgtgttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagt |
4652850 |
T |
|
| Q |
242 |
gaatatgacgaagctgagagagcaact |
268 |
Q |
| |
|
|||| || |||||||| ||||| |||| |
|
|
| T |
4652851 |
gaatgtggcgaagctgggagagtaact |
4652877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University