View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1544_high_2 (Length: 249)
Name: NF1544_high_2
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1544_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40207899 - 40207662
Alignment:
| Q |
1 |
acaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagac |
100 |
Q |
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| T |
40207899 |
acaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagctagagac |
40207800 |
T |
|
| Q |
101 |
agaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatg |
200 |
Q |
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| T |
40207799 |
agaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatg |
40207700 |
T |
|
| Q |
201 |
caaacaaaataaaagacaatacttaattaccggttctt |
238 |
Q |
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| T |
40207699 |
caaacaaaataaaagtcaatacttaattaccggttctt |
40207662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 40199576 - 40199384
Alignment:
| Q |
5 |
agaagaatggcagtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaa |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |
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| T |
40199576 |
agaagaatggaagtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagca |
40199477 |
T |
|
| Q |
105 |
ctccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagt |
197 |
Q |
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| T |
40199476 |
ctccagaccctaccacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcataaaacctattaaaatttgggtcgagt |
40199384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 40203739 - 40203555
Alignment:
| Q |
5 |
agaagaatggcagtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaa |
104 |
Q |
| |
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|||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
40203739 |
agaagaatggaggtataataagtaacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagca |
40203640 |
T |
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| Q |
105 |
ctccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttg |
189 |
Q |
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| T |
40203639 |
ctccagaccctatcacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttg |
40203555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 10299760 - 10299851
Alignment:
| Q |
59 |
ccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtcca |
150 |
Q |
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|||||||||||||| ||||| ||||||||||| || | |||||| |||||||| || | ||||||||| |||| ||||||||||| ||||| |
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| T |
10299760 |
ccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgctgtcca |
10299851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 39429174 - 39429280
Alignment:
| Q |
55 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
154 |
Q |
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||||||||||||||| || || |||||||| |||||||||| ||||| || || || |||| ||||||||||| | |||| ||||| ||||||||| |
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| T |
39429174 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagcttgcggtccaaaca |
39429273 |
T |
|
| Q |
155 |
gttcctg |
161 |
Q |
| |
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|||||| |
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| T |
39429274 |
cttcctg |
39429280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 6249434 - 6249330
Alignment:
| Q |
55 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
154 |
Q |
| |
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||||||||||| ||| || || ||||| || |||||||||| ||||| || || || |||| |||||||||||||| |||| | |||||||| ||||| |
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| T |
6249434 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtcaaaaca |
6249335 |
T |
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| Q |
155 |
gttcc |
159 |
Q |
| |
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|||| |
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| T |
6249334 |
cttcc |
6249330 |
T |
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