View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1544_low_1 (Length: 485)
Name: NF1544_low_1
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1544_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 5348700 - 5348248
Alignment:
| Q |
18 |
acttttaagtgcattgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5348700 |
acttttaagtgcattgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatg |
5348601 |
T |
|
| Q |
118 |
aagctaagtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatatggaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5348600 |
aagctaagtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagaccaattctcagatgatgagatatggaagg |
5348501 |
T |
|
| Q |
218 |
tttgataattgaaaatccttgatcatattgatccttttagattaatttatttagtccttatattatcatattgtactagtaacataataaattaatggtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5348500 |
tttgataattgaaaatccttgatcatattgatccttttagattaatttatttagtccttatattatcatattgtactagtaacataataaattaatggtt |
5348401 |
T |
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| Q |
318 |
ttcatttgtgtataggttttagagatgtgtcaacttaaggaggttttatctggactgccacatcttttggactcatcaggttatatagtttcattcattt |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5348400 |
ttcatttgtgtataggttttagagatgtgtcaactcaaggaggttttatctggactgccacatcttttggactcatcaggttatatagtttcattcattt |
5348301 |
T |
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| Q |
418 |
gctaatattcacttagtttattgttaataatagctaacatgattaacttttga |
470 |
Q |
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| T |
5348300 |
gctaatattcacttagtttattgttaataatagctaacatgattaacttttga |
5348248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 15128077 - 15128270
Alignment:
| Q |
25 |
agtgcattgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatgaagctaa |
124 |
Q |
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||||| |||||||| || || || ||| |||| ||||| || ||||| ||||| | ||||| |||||||| || | || ||||| ||||||||||||| |
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| T |
15128077 |
agtgctttgtttcgcttagttgagccttcaagaggtgatattcttattgatgggataaacatttgctcaatgggattgaaggatttgagaatgaagctaa |
15128176 |
T |
|
| Q |
125 |
gtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatatggaaggt |
218 |
Q |
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| || |||||||||||||||| |||||||||||| || ||||||| ||| |||| || |||| | | |||||||||||| ||||||||||| |
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| T |
15128177 |
gcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctaggcctgtactcagatgatgaaatatggaaggt |
15128270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 5287650 - 5287457
Alignment:
| Q |
25 |
agtgcattgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatgaagctaa |
124 |
Q |
| |
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||||| |||||||| || || || ||| |||| ||||| || ||||||||||| |||||||||||||||| || | || ||||| |||| ||||||| |
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| T |
5287650 |
agtgctttgtttcgcttagttgagccttcaagaggtgatattcttatagatggggttaacatatgctcaatcggattgaaggatttgagaacaaagctaa |
5287551 |
T |
|
| Q |
125 |
gtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatatggaaggt |
218 |
Q |
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| T |
5287550 |
gcatcattcctcaagaaccaacacttttcaagggcagcattagaacaaacctggaccctctaggcctgtattcagatgatgaaatatggaaggt |
5287457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 14946954 - 14946770
Alignment:
| Q |
31 |
ttgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatgaagctaagtatca |
130 |
Q |
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|||||||| || || || ||| |||| ||||| || ||||| ||||| | ||||| |||||||| || | || ||||| ||||||| |||||| || | |
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| T |
14946954 |
ttgtttcgcttagttgagccttcaagcggtgatattcttattgatgggataaacatttgctcaatggggttgaaggatttgagaatgaggctaagcataa |
14946855 |
T |
|
| Q |
131 |
tccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagacaaattctcagatgatgagatatggaa |
215 |
Q |
| |
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||||||||||||||| |||||||||||| || ||||||| ||| |||| || |||| | | |||||||||||| |||||||| |
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| T |
14946854 |
tccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctaggcctgtactcagatgatgaaatatggaa |
14946770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 5279954 - 5279817
Alignment:
| Q |
18 |
acttttaagtgcattgtttcgtttggtggaacctacaagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatg |
117 |
Q |
| |
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|||| ||||||| |||||||| || || || ||| ||| ||||| || ||||| |||||| |||||||||||||||| || | || ||||| |||| |
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| T |
5279954 |
acttataagtgctttgtttcgcttagttgagccttcaaaaggtgatattcttattgatggaattaacatatgctcaatcgggttaaaggatttgagaaca |
5279855 |
T |
|
| Q |
118 |
aagctaagtatcatccctcaagaaccaattcttttcaa |
155 |
Q |
| |
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|||||||| ||||| || |||||||||| |||||||| |
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| T |
5279854 |
aagctaagcatcattccgcaagaaccaacacttttcaa |
5279817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 5316234 - 5316310
Alignment:
| Q |
82 |
aacatatgctcaattggtcttaaagatttaagaatgaagctaagtatcatccctcaagaaccaattcttttcaaggg |
158 |
Q |
| |
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|||||||||||||| || | || ||||| |||| |||||||| ||||| ||||||||||||| |||||||||||| |
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| T |
5316234 |
aacatatgctcaatcgggttgaaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaaggg |
5316310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 5309531 - 5309636
Alignment:
| Q |
53 |
caagtggtgaaatacttatagatggacttaacatatgctcaattggtcttaaagatttaagaatgaagctaagtatcatccctcaagaaccaattctttt |
152 |
Q |
| |
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|||| ||||| || || |||||||| |||||||||||||||| || | | ||||| |||| ||||||||| ||||| || |||||||||| ||||| |
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| T |
5309531 |
caagaggtgatattctcatagatgggattaacatatgctcaatcggattgagggatttgagaacgaagctaagcatcattccgcaagaaccaacactttt |
5309630 |
T |
|
| Q |
153 |
caaggg |
158 |
Q |
| |
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|||||| |
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|
| T |
5309631 |
caaggg |
5309636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 31524185 - 31524097
Alignment:
| Q |
70 |
atagatggacttaacatatgctcaattggtcttaaagatttaagaatgaagctaagtatcatccctcaagaaccaattcttttcaaggg |
158 |
Q |
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|||||||| ||||||||||||| || || | |||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
31524185 |
atagatgggattaacatatgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaaggg |
31524097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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