View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1544_low_10 (Length: 236)
Name: NF1544_low_10
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1544_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 48240237 - 48240020
Alignment:
| Q |
1 |
actacttgtggtttgaccgatagatagtaaaagactagagttttctcttgagtcctacaaatatagtcgttgttttgattcattggttcaccaattatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48240237 |
actacttgtggtttgaccgatagatagtaaaagactagagttttctcttgagtcctacaaatatagtcgttgttttgattcattggttcaccaattatat |
48240138 |
T |
|
| Q |
101 |
ttccataaggtaaaaacaagtgtggttcgtctcatcgctgaaaaacgaagaaagctactattgcgagaaatatgcgcaatccacctccaccggcaggctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48240137 |
ttccataaggtaaaaacaagtgtggttcgtctcatcgctgaaaaacgaagaaagctactattgcgagaaatatgcgcaatccacctccaccggcaggctc |
48240038 |
T |
|
| Q |
201 |
gggttctcaccatcctgg |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48240037 |
gggttctcaccatcctgg |
48240020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University