View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1544_low_3 (Length: 401)
Name: NF1544_low_3
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1544_low_3 |
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| [»] scaffold0066 (3 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 31866 - 31478
Alignment:
| Q |
1 |
tatatcattttaaggcttcctcaaaataatatgccatcggtaaactccgacttcctcaaatattagaggagtgaagcttatcttagcattcggatgaatg |
100 |
Q |
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| T |
31866 |
tatatcattttaaggcttcctcaaaataatatgccataggtaaactccgacttcctcaaacattagaggactgaagcttatcttagcattcggatgagtg |
31767 |
T |
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| Q |
101 |
aagcttattttactgtaaaaactatactcctatttaatagtaatattgtacttgtgattttttgttgttgttggtaataacagaaactaaccgaatttat |
200 |
Q |
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| T |
31766 |
aagcttgttttactataaaaactatactcctatttaatagtaatattttacttgtgattttttgttgttgttggtaataacagcaactaactgaatttat |
31667 |
T |
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| Q |
201 |
tgttgggaggcagggtatctctacagacaggatactagatttgagaaagcttttagcggtccatgttgagacttgtcacttgactaacttctccttatgt |
300 |
Q |
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| T |
31666 |
tgttgggaggcagggtatctctacagacaggatactagatttgagaaagcttttagcggtccatgttgagacttgtcacttgactaacttctccttatgt |
31567 |
T |
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| Q |
301 |
cacgaggtatggtaatgttttgatgaatagatggatgcatgttatgttattttagttgaactgaaattgagagaattgaacacaggttc |
389 |
Q |
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| T |
31566 |
cacgaggtatggtaatgttttgatgaatagatggatgcatgttatgttattttagttgaactgaaattgagagaattgaacacaggttc |
31478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 194 - 389
Target Start/End: Complemental strand, 33990 - 33806
Alignment:
| Q |
194 |
aatttattgttgggaggcagggtatctctacagacaggatactagatttgagaaagcttttagcggtccatgttgagacttgtcacttgactaacttctc |
293 |
Q |
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| T |
33990 |
aatttattgttgg-agtccgggtatctctacggac----tactagatctgagaaagcttttagcggtccatattgagacttgtcacttgactaacttctc |
33896 |
T |
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| Q |
294 |
cttatgtcacgaggtatggtaatgttttgatgaatagatggatgcatgttatgttattttagttgaactgaaattgagagaattgaacacaggttc |
389 |
Q |
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| T |
33895 |
cttatgtcacgaggtatggtaatgttttgatgaatagatggatgcatgttatgttattttagttg------aattgagaaaattgaacacaggttc |
33806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 34593 - 34509
Alignment:
| Q |
77 |
cttatcttagcattcggatgaatgaagcttattttactgt-aaaaactatactcctatttaatagtaatattgtacttgtgattt |
160 |
Q |
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| T |
34593 |
cttatcttagcatttggatgagtgaagcttattttactataaaaaattatactcctatttaatagtaatattttacttatgattt |
34509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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