View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1544_low_5 (Length: 249)

Name: NF1544_low_5
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1544_low_5
NF1544_low_5
[»] chr2 (3 HSPs)
chr2 (13-249)||(13109939-13110173)
chr2 (182-249)||(88609-88676)
chr2 (182-249)||(18345557-18345624)
[»] chr7 (6 HSPs)
chr7 (182-249)||(1581666-1581733)
chr7 (186-249)||(16098544-16098607)
chr7 (182-249)||(16731983-16732050)
chr7 (182-249)||(17710117-17710184)
chr7 (193-244)||(30493685-30493736)
chr7 (182-237)||(30824557-30824612)
[»] chr5 (4 HSPs)
chr5 (182-249)||(25730858-25730925)
chr5 (186-249)||(4268153-4268216)
chr5 (182-240)||(15988828-15988886)
chr5 (182-244)||(34652329-34652391)
[»] chr4 (4 HSPs)
chr4 (182-249)||(21321577-21321644)
chr4 (182-249)||(47226400-47226467)
chr4 (182-249)||(49951363-49951430)
chr4 (182-249)||(28537857-28537924)
[»] chr3 (1 HSPs)
chr3 (186-249)||(53497086-53497149)
[»] chr1 (4 HSPs)
chr1 (182-249)||(5609389-5609456)
chr1 (182-249)||(16816870-16816937)
chr1 (186-249)||(44527307-44527370)
chr1 (182-249)||(4395208-4395275)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 13110173 - 13109939
Alignment:
Q  13 aatattgatggtcgtcgatcggccaagtagagaggttatcgttactgataataggattaagaaaaacaagagacctattgagttggtggttgctgggcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  13110173 aatattgatggtcgtcgatcggccaagtagagaggttatcgttactgataataggattaagaaaaacaagagacctattga---ggtggttgctgggcta 13110077  T
Q  113 ggagtaagctgagagcatgtgtgcctatcgtaaatagtttctttagaataccaaatgtca-nnnnnnnccactcgaggcccttcacttagctgatgcgat 211  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  13110076 ggagtaagctgagagcatgtgtgcctgtcgtaaatagtttttttagaataccaaatgtcattttttttccactcgaggcccttcacttagctgatgcgat 13109977  T
Q  212 cagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||| ||   ||||||||||||||||||||||||||    
T  13109976 cagatgggacatggttgtcttcgagtccgactcttcta 13109939  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 88609 - 88676
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||||||| | |||||| | |||||| || ||||||||||||||||||||||| ||||    
T  88609 actcgaggcccttcactttgttgatgctaacagatgggaccgggttgtcttcgagtccgactcatcta 88676  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 18345624 - 18345557
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||||||| |||||||| | |||||| |||||  |||||||||| |||||||| ||||    
T  18345624 actcgaggcccttcactttgctgatgctaacagatgggatcgaattgtcttcgaatccgactcatcta 18345557  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 1581666 - 1581733
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||||||| |||||||||| |||||||||||||||| | || |||||| |||| ||||    
T  1581666 actcgaggcccttcactttgctgatgcgaacagatgagatcgggttctattggagtccaactcatcta 1581733  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 16098544 - 16098607
Alignment:
Q  186 gaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    ||||||||||| || |||||||| | || ||| || ||||||||||||||||||||||| ||||    
T  16098544 gaggcccttcaatttgctgatgctaacaaatgggaccgggttgtcttcgagtccgactcatcta 16098607  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 16731983 - 16732050
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||| ||||||  |||||||||| ||||||  | || |||||||||||||||||||| ||||    
T  16731983 actcgaggccattcactctgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgtcta 16732050  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 17710117 - 17710184
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||| ||||||  |||||||||| ||||||  | || |||||||||||||||||||| ||||    
T  17710117 actcgaggccattcactctgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgtcta 17710184  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 30493736 - 30493685
Alignment:
Q  193 ttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactc 244  Q
    ||||||||||||||  || ||||||||| | |||||||||||||||||||||    
T  30493736 ttcacttagctgatatgaacagatgagaccaggttgtcttcgagtccgactc 30493685  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 30824612 - 30824557
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagt 237  Q
    ||||||||||||||||||  || |||||| |||||| |||| ||||||||||||||    
T  30824612 actcgaggcccttcacttttctaatgcgaacagatgggatcaggttgtcttcgagt 30824557  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 25730858 - 25730925
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||||||| |||||||||| |||||| ||  | |||||||||||||||||||| ||||    
T  25730858 actcgaggcccttcactttgctgatgcgaacagatgggactgagttgtcttcgagtccgactcatcta 25730925  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 4268153 - 4268216
Alignment:
Q  186 gaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||| |||||||| | ||| || || |||||| |||||||||||||||| ||||    
T  4268153 gaggcccttcactttgctgatgctaacaggtgggaccgggttttcttcgagtccgactcatcta 4268216  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 15988886 - 15988828
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccg 240  Q
    ||||||||||||| |||| |||||||||| || ||| || |||||||||||| ||||||    
T  15988886 actcgaggccctttactttgctgatgcgaacatatgggaccgggttgtcttcaagtccg 15988828  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 34652391 - 34652329
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactc 244  Q
    |||||| ||| ||||||| || |||| || |||||| |||||||||||||||||| |||||||    
T  34652391 actcgatgccattcactttgccgatgtgaacagatgggatcgggttgtcttcgagcccgactc 34652329  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 21321577 - 21321644
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    ||||||||||||||||||  ||||||| | |||||| || ||||||||||||||||||||||| ||||    
T  21321577 actcgaggcccttcacttttctgatgctaacagatgggaccgggttgtcttcgagtccgactcatcta 21321644  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 47226467 - 47226400
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||  ||||||| |||||||||| |||||||||||| ||||| |||||||||||||| ||||    
T  47226467 actcgaggcttttcactttgctgatgcgaacagatgagatcgagttgtgttcgagtccgactcatcta 47226400  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 49951363 - 49951430
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||||||| |||||||||| ||||||  | || |||||||||||||||||||| ||||    
T  49951363 actcgaggcccttcactttgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgtcta 49951430  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 28537924 - 28537857
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||||||| | |||||||| |||||| || |||||||| ||| |||||||||| ||||    
T  28537924 actcgaggcccttcactttgttgatgcgaacagatgggaccgggttgtgttcaagtccgactcatcta 28537857  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 53497086 - 53497149
Alignment:
Q  186 gaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||| |||||||| | |||||| || ||||||||||||||||||||||| ||||    
T  53497086 gaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcatcta 53497149  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 5609389 - 5609456
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||| ||||||||| | || ||||| |||||||||||||||||||||||||| |||||| ||||    
T  5609389 actcgaggtccttcactttgatgttgcgaacagatgagatcgggttgtcttcgagttcgactcatcta 5609456  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 16816937 - 16816870
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    ||||||||||||||| || |||||||| | |||||| || ||||||||||||||||||||||| ||||    
T  16816937 actcgaggcccttcattttgctgatgcaaacagatgggaccgggttgtcttcgagtccgactcgtcta 16816870  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 44527307 - 44527370
Alignment:
Q  186 gaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||| |||||||| | |||||| || ||||||||||||||||||||||| ||||    
T  44527307 gaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcatcta 44527370  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 4395208 - 4395275
Alignment:
Q  182 actcgaggcccttcacttagctgatgcgatcagatgagatcgggttgtcttcgagtccgactcttcta 249  Q
    |||||||||||||||||| ||||||||||  ||||| || | |||| ||||||||||| |||| ||||    
T  4395208 actcgaggcccttcactttgctgatgcgaatagatgggaccaggttatcttcgagtccaactcatcta 4395275  T

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