View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1544_low_7 (Length: 246)

Name: NF1544_low_7
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1544_low_7
NF1544_low_7
[»] scaffold0341 (3 HSPs)
scaffold0341 (1-239)||(12216-12454)
scaffold0341 (142-235)||(4737-4829)
scaffold0341 (1-39)||(4591-4629)
[»] chr1 (8 HSPs)
chr1 (1-239)||(6510536-6510774)
chr1 (142-235)||(6503057-6503150)
chr1 (141-236)||(6515066-6515161)
chr1 (141-235)||(6497722-6497816)
chr1 (5-104)||(6514939-6515039)
chr1 (141-239)||(6525340-6525438)
chr1 (1-39)||(6502912-6502950)
chr1 (5-39)||(6497557-6497591)
[»] chr5 (1 HSPs)
chr5 (141-240)||(28828947-28829046)


Alignment Details
Target: scaffold0341 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 12216 - 12454
Alignment:
Q  1 attacatactcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12216 attacatactcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttg 12315  T
Q  101 cataaactaatttaaaaacaaccaatactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagc 200  Q
    ||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  12316 cataaactaatttaaaaacaaccaatactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagc 12415  T
Q  201 cttgccatgccaaaatcagctatcttaggattcatctct 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12416 cttgccatgccaaaatcagctatcttaggattcatctct 12454  T

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Target: scaffold0341; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 4737 - 4829
Alignment:
Q  142 cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat 235  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4737 cttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcat 4829  T

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Target: scaffold0341; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4591 - 4629
Alignment:
Q  1 attacatactcaggtgccatatatccactacaaaacaat 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  4591 attacatactcaggtgccatatatccgctacaaaacaat 4629  T

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Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6510536 - 6510774
Alignment:
Q  1 attacatactcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510536 attacatactcaggtgccatatatccactacaaaacaatatgggagttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttg 6510635  T
Q  101 cataaactaatttaaaaacaaccaatactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagc 200  Q
    ||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  6510636 cataaactaatttaaaaacaaccaatactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagc 6510735  T
Q  201 cttgccatgccaaaatcagctatcttaggattcatctct 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6510736 cttgccatgccaaaatcagctatcttaggattcatctct 6510774  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 6503057 - 6503150
Alignment:
Q  142 cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6503057 cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcat 6503150  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 6515066 - 6515161
Alignment:
Q  141 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatc 236  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6515066 acttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatc 6515161  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 6497722 - 6497816
Alignment:
Q  141 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcat 235  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||||| |||||||||||||||    
T  6497722 acttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcat 6497816  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 6514939 - 6515039
Alignment:
Q  5 catactcaggtgccatatatccactacaaaacaatatggg-agttaagctaaattaagcaaaatattttcacttatcttcaactttctactaacttgcat 103  Q
    ||||||| ||||||||||| |||||||| ||||||||||  |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  6514939 catactctggtgccatatacccactacataacaatatggatagttcagctaaattaagaaaaatatttttacttatcttcaactttctactaacttgcat 6515038  T
Q  104 a 104  Q
    |    
T  6515039 a 6515039  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 6525438 - 6525340
Alignment:
Q  141 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctct 239  Q
    |||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| || || |||||||||||||| |||||||||||||||||||||    
T  6525438 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctct 6525340  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6502912 - 6502950
Alignment:
Q  1 attacatactcaggtgccatatatccactacaaaacaat 39  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  6502912 attacatactcaggtgccatatatccgctacaaaacaat 6502950  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 6497557 - 6497591
Alignment:
Q  5 catactcaggtgccatatatccactacaaaacaat 39  Q
    |||| ||||||||||||||||||||||||||||||    
T  6497557 catattcaggtgccatatatccactacaaaacaat 6497591  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 28828947 - 28829046
Alignment:
Q  141 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctc 240  Q
    |||||||| ||||| ||||||||| |||| ||| | || ||||| || |||  ||  || ||||||||||||||||| |||||||||| |||||| ||||    
T  28828947 acttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtctc 28829046  T

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