View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1544_low_8 (Length: 246)
Name: NF1544_low_8
Description: NF1544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1544_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 225850 - 225624
Alignment:
| Q |
16 |
tgtgatgatagagatattcataagagcaggagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctctttttcgaactgaatgtttt |
115 |
Q |
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| T |
225850 |
tgtgatgatagagatattcataagaacagaagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctcttttccgaactgaatgtttt |
225751 |
T |
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| Q |
116 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctggacctattcctccaggtttagccagaaggtaagtaaaacttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225750 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctggacctattcctccaggtttagccagaaggtaagtaaaacttg |
225651 |
T |
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| Q |
216 |
atcaaagattgttacaatcaggattct |
242 |
Q |
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||||||||||||||||||||||||||| |
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| T |
225650 |
atcaaagattgttacaatcaggattct |
225624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 233441 - 233218
Alignment:
| Q |
16 |
tgtgatgatagagatattcataagagcaggagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctctttttcgaactgaatgtttt |
115 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233441 |
tgtgatgatagagatattcataagaacagaagtgagtgattggacacaaatatcatgtgtgaagaagcagtgggcatctctttttcgaactgaatgtttt |
233342 |
T |
|
| Q |
116 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctggacctattcctccaggtttagccagaaggtaagtaaaacttg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
233341 |
tggcaagctgctctttctcacatctatccattcaccaatccttctcaaacttggcctagacctattcctccaggtttagtcagaaagtaagtaaaacttg |
233242 |
T |
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| Q |
216 |
atcaaagattgttacaatcaggatt |
240 |
Q |
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|| ||||||||||| ||||||||| |
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| T |
233241 |
at-taagattgttactatcaggatt |
233218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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