View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15450_low_1 (Length: 437)
Name: NF15450_low_1
Description: NF15450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15450_low_1 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 30037743 - 30037618
Alignment:
| Q |
1 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30037743 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttt |
30037644 |
T |
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| Q |
101 |
taccagaagaacgattcttgtctctt |
126 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30037643 |
taccagaagaacgattcttgtctctt |
30037618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 30153332 - 30153207
Alignment:
| Q |
1 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30153332 |
cgagtaccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttggaatcagttt |
30153233 |
T |
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| Q |
101 |
taccagaagaacgattcttgtctctt |
126 |
Q |
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| |||||||||||||||||||||||| |
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| T |
30153232 |
ttccagaagaacgattcttgtctctt |
30153207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 30040034 - 30039948
Alignment:
| Q |
5 |
taccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
91 |
Q |
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| T |
30040034 |
taccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagcgtaaatgaattttcgatttgg |
30039948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 30037419 - 30037323
Alignment:
| Q |
292 |
atcgtgaacttaactcagttggtaggattaatatcctcgtgagcataaccttaagacaatctataatatatgtaaggttttaggttcaaaatctggt |
388 |
Q |
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| T |
30037419 |
atcgtgaacttaacttagttggtaggatcaatgtcttcgtgagcataacgttaaaacaatgcataatatatgcaaggttttaggtttaaaatctggt |
30037323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 30037545 - 30037491
Alignment:
| Q |
174 |
tccataacttttagttatattcagaacgtcatgatagaataattactatcatttc |
228 |
Q |
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| T |
30037545 |
tccataacttttagttatattctgaacgtcatgatagaataattattatcatttc |
30037491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 30153178 - 30153089
Alignment:
| Q |
125 |
ttttcaaatattaataaaaggctggtgatttcctcgagnnnnnnnnnnntccataacttttagttatattcagaacgtcatgatagaataa |
215 |
Q |
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| T |
30153178 |
ttttcaaatattaataaaaggctggtgatttcctcgag-aaaaaaaaaatccataacttttagttatattcacaacatcatcatagaataa |
30153089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 30148326 - 30148268
Alignment:
| Q |
33 |
tgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
91 |
Q |
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||||||| ||||||||||| |||||| |||||||||||||| | | || |||||||||| |
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| T |
30148326 |
tgcaacgattgtgaatgccatttctaaacactgacagtgtaaatgaatgttggatttgg |
30148268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 45040 - 45126
Alignment:
| Q |
5 |
taccttaacattgataactgagcttggctgcaacgtttgtgaatgccgtttctatacactgacagtgtatacggattttggatttgg |
91 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| ||| | | ||||| ||||||| |
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| T |
45040 |
taccttaacattgataactgagcttggatgcaacgattgtgaatgccgtttctaaacactgacagcgtaaatgaattttcgatttgg |
45126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 27279442 - 27279406
Alignment:
| Q |
345 |
agacaatctataatatatgtaaggttttaggttcaaa |
381 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
27279442 |
agacaatgtataatatatgtaaggtttgaggttcaaa |
27279406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 381
Target Start/End: Complemental strand, 4806834 - 4806798
Alignment:
| Q |
345 |
agacaatctataatatatgtaaggttttaggttcaaa |
381 |
Q |
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||||||| ||||||||||||||||||| ||||||||| |
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| T |
4806834 |
agacaatgtataatatatgtaaggtttgaggttcaaa |
4806798 |
T |
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