View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15450_low_2 (Length: 432)
Name: NF15450_low_2
Description: NF15450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15450_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 38709477 - 38709068
Alignment:
| Q |
16 |
atatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38709477 |
atatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatgcat |
38709378 |
T |
|
| Q |
116 |
tcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttcgatttcatcatcaccaatgacctcatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38709377 |
tcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttccgtttcatcatcaccaatgacctcatat |
38709278 |
T |
|
| Q |
216 |
ccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38709277 |
ccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcaccccagtttcagcattaacaatctctccattcttttccacac |
38709178 |
T |
|
| Q |
316 |
ggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccac |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709177 |
ggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccac |
38709078 |
T |
|
| Q |
416 |
attcatctca |
425 |
Q |
| |
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|||| ||||| |
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| T |
38709077 |
attcttctca |
38709068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 172 - 425
Target Start/End: Complemental strand, 10047358 - 10047105
Alignment:
| Q |
172 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgactt |
271 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
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| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
272 |
catcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctca |
371 |
Q |
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|| ||||||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||| | |||||||| |||||| |
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| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctca |
10047159 |
T |
|
| Q |
372 |
tcaattttttcctttatatacatcatagccagctcactcaccacattcatctca |
425 |
Q |
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||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||| |
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|
| T |
10047158 |
tcaatttcttcccttataagcatcatagatagctctgtcaccacattcttctca |
10047105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
62 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
125 |
Q |
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|||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||| |
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| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 246 - 378
Target Start/End: Complemental strand, 45468976 - 45468844
Alignment:
| Q |
246 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaa |
345 |
Q |
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|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || ||||||||||||||| |
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| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
|
| Q |
346 |
catcaatgtatacagttgtgttctcatcaattt |
378 |
Q |
| |
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|||| ||||| || ||||| ||||||||||||| |
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| T |
45468876 |
catctatgtaaaccgttgtattctcatcaattt |
45468844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 406
Target Start/End: Original strand, 739517 - 739691
Alignment:
| Q |
232 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcact |
331 |
Q |
| |
|
||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| || | ||||| || ||| | ||| |||| |
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| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctcttcactattttctgcacggtgtaccaaaccact |
739616 |
T |
|
| Q |
332 |
tcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctc |
406 |
Q |
| |
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||| |||||| || |||| ||||| || ||||| || |||||||||| |||| ||||| |||| ||| |||||| |
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| T |
739617 |
tccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacagctc |
739691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 25078763 - 25078815
Alignment:
| Q |
70 |
actaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaa |
122 |
Q |
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|||||||||||||| ||| ||| || ||||||||| |||||| |||||||||| |
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|
| T |
25078763 |
actaataaaagagacactcgtggatgtgtttgcaatttcgatacattcaagaa |
25078815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
44 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
117 |
Q |
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|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| |
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| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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