View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15450_low_3 (Length: 406)

Name: NF15450_low_3
Description: NF15450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15450_low_3
NF15450_low_3
[»] chr7 (8 HSPs)
chr7 (1-399)||(32562523-32562921)
chr7 (87-344)||(5459397-5459652)
chr7 (337-399)||(32562150-32562212)
chr7 (107-238)||(4123020-4123150)
chr7 (140-260)||(4514208-4514328)
chr7 (194-260)||(21019822-21019888)
chr7 (353-386)||(19650499-19650532)
chr7 (195-260)||(39227766-39227831)
[»] chr4 (10 HSPs)
chr4 (80-385)||(20748140-20748443)
chr4 (102-286)||(16404374-16404559)
chr4 (80-279)||(17651280-17651480)
chr4 (172-383)||(17743551-17743757)
chr4 (103-230)||(39938421-39938547)
chr4 (216-263)||(6116088-6116135)
chr4 (87-236)||(23692500-23692648)
chr4 (141-287)||(16300977-16301122)
chr4 (103-184)||(21545953-21546034)
chr4 (207-256)||(35150531-35150580)
[»] chr8 (7 HSPs)
chr8 (144-383)||(12843051-12843288)
chr8 (87-280)||(10516817-10517010)
chr8 (80-197)||(20706627-20706743)
chr8 (80-254)||(35104098-35104272)
chr8 (204-278)||(18535293-18535368)
chr8 (228-267)||(24502648-24502687)
chr8 (353-385)||(15177576-15177608)
[»] chr1 (7 HSPs)
chr1 (107-343)||(34488093-34488327)
chr1 (118-287)||(17048213-17048382)
chr1 (87-261)||(11833206-11833378)
chr1 (191-259)||(12900632-12900700)
chr1 (88-131)||(40817403-40817446)
chr1 (159-230)||(12889337-12889407)
chr1 (115-233)||(36755289-36755406)
[»] chr2 (6 HSPs)
chr2 (87-278)||(29966507-29966699)
chr2 (82-233)||(18114603-18114753)
chr2 (109-259)||(30462607-30462756)
chr2 (87-205)||(16195375-16195493)
chr2 (91-259)||(21538820-21538987)
chr2 (313-382)||(18114825-18114894)
[»] chr6 (2 HSPs)
chr6 (94-259)||(14760801-14760966)
chr6 (243-338)||(33546283-33546375)
[»] chr5 (4 HSPs)
chr5 (107-342)||(25954549-25954781)
chr5 (87-185)||(16687561-16687658)
chr5 (196-260)||(11848679-11848743)
chr5 (192-260)||(22186035-22186103)
[»] chr3 (1 HSPs)
chr3 (208-254)||(2120540-2120586)


Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 32562921 - 32562523
Alignment:
Q  1 aggcctaaagatttgagtaaataaaaaggacttaatcattcttgaaattttttattcaaaaatatgaagaccatacaaaagagtccttgtttgaagattg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32562921 aggcctaaagatttgagtaaataaaaaggacttaatcatttttgaaattttttattcaaaaatatgaagaccacacaaaagagtccttgtttgaagattg 32562822  T
Q  101 ctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtt 200  Q
     ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  32562821 ataactcatcaaattctttcttgagaagttttgattcagatttgaaaactttgcttcaaatggataatgtcgttgaattgtactaggaatatcctttgtt 32562722  T
Q  201 tcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgattaaagaagacaaacaatactattagtataactttg 300  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32562721 tcttatggaatcacctgttacattctctttgtcattaaagttctttgtttgtttctgcacatgattaaagaagacaaacaatactattagtataactttg 32562622  T
Q  301 gaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttccttcaaaacatgttcatctca 399  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32562621 gaagcgacatttcttcaaaagaagacaaaactagtcagagccacctatattgttgatgtgtccatcataacttgcttccttcaaaacatgttcatctca 32562523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 87 - 344
Target Start/End: Complemental strand, 5459652 - 5459397
Alignment:
Q  87 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 186  Q
    ||||||||||| || ||   |||||||||| |||||  |||| ||||| |||  |||||||||||||| || |||||||||||  ||||||| ||||||     
T  5459652 ttgtttgaagagtgttagtgcatcaaattcgtccttaggaagctttgaatcagttttgaaaactttgcctctaatggataatgatgttgaatagtactac 5459553  T
Q  187 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatact 285  Q
      | |||||||||| ||  | ||||||||||||||||||||||||||| | || |||||||||||||| ||||| || | | || |||| ||||||||||    
T  5459552 ataggtcctttgttactggtagaatgatctgttacattctctttgccactgaatttctttgtttgtttttgcacgtggtcagaaaaagataaacaatact 5459453  T
Q  286 attagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcac 344  Q
    || ||   || |||| ||||||| ||||| ||||||||||||||| | || ||||||||    
T  5459452 atcag---aattttgaaagcgacgtttctccaaaagaagacaaaattggtgagagtcac 5459397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 32562212 - 32562150
Alignment:
Q  337 agagtcacttatattgttgatgtgtccatcagaacttgcttccttcaaaacatgttcatctca 399  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32562212 agagccacctatattgttgatgtgtccatcagaacttgcttccttcaaaacatgttcatctca 32562150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 4123150 - 4123020
Alignment:
Q  107 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 206  Q
    ||||||||||||| |||||||| ||| || ||||||| || ||| ||| ||  ||||||||||| ||| ||||||| |||  | ||| ||||||||||||    
T  4123150 catcaaattcttcattgagaagctttcat-catattttaatactctgcctctgatggataatgtcgttaaattgtattagagaagtcatttgtttcttat 4123052  T
Q  207 ggaatgatctgttacattctctttgccattaa 238  Q
     ||||||||||||||||  |||||||||||||    
T  4123051 agaatgatctgttacatattctttgccattaa 4123020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 4514328 - 4514208
Alignment:
Q  140 atttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaa 239  Q
    ||||||||||||||| |||| |||||||||| ||||||| ||| | | ||  || |||| ||| |||||||||||||| |||||| |||||||| || ||    
T  4514328 atttgaaaactttgcatcaattggataatgtcgttgaatagtatttgaaaaatcatttgcttcatatggaatgatctgctacattatctttgcctttgaa 4514229  T
Q  240 gttctttgtttgtttctgcac 260  Q
     || ||||||||||| |||||    
T  4514228 tttatttgtttgtttatgcac 4514208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 21019822 - 21019888
Alignment:
Q  194 ctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 260  Q
    ||||| |||| |||||||||| ||||||||||||||| || || || || |||||||||||| ||||    
T  21019822 ctttgcttctaatggaatgatttgttacattctctttccccttgaatttttttgtttgtttcagcac 21019888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Original strand, 19650499 - 19650532
Alignment:
Q  353 ttgatgtgtccatcagaacttgcttccttcaaaa 386  Q
    ||||||||||||||||||||||||| ||||||||    
T  19650499 ttgatgtgtccatcagaacttgctttcttcaaaa 19650532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 39227831 - 39227766
Alignment:
Q  195 tttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 260  Q
    ||||||||||||  |||||| |||||||||||| ||| | ||||  |||||||||| |||||||||    
T  39227831 tttgtttcttatataatgatatgttacattctccttgtctttaattttctttgtttatttctgcac 39227766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 80 - 385
Target Start/End: Original strand, 20748140 - 20748443
Alignment:
Q  80 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 179  Q
    |||||| |||||||||||  || ||| |||||||||| | ||||||||| ||||| |||  ||||||||| |||  || |||||||||||| ||| |||     
T  20748140 agagtcgttgtttgaagagggccaacacatcaaattcgttcttgagaagctttgaatcaattttgaaaacgttgtctctaatggataatgtcgttaaata 20748239  T
Q  180 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 278  Q
    |||||||  |  ||||||| ||||||| ||||||| |||||||||||||||||| || || || ||||||||||| ||||| || ||| || ||||||||    
T  20748240 gtactagagaaatcctttgcttcttatcgaatgatgtgttacattctctttgccgttgaatttttttgtttgtttttgcacgtggttagaaaaagacaaa 20748339  T
Q  279 caatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttc 378  Q
    || |||||  ||   ||||||| || | || || | ||| |||||||||||||||||||  ||||  ||   | ||||||||||| | ||||| ||||||    
T  20748340 cagtactaccag---aactttgaaaacaacgttccatcataagaagacaaaactagtcatggtcatctaggctattgatgtgtcctttagaacatgcttc 20748436  T
Q  379 cttcaaa 385  Q
    |||||||    
T  20748437 cttcaaa 20748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 286
Target Start/End: Complemental strand, 16404559 - 16404374
Alignment:
Q  102 taactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgttt 201  Q
    |||| |||||||||| | ||||||||||||||| ||| ||||||||||||| | ||||||||| || || |||||||  || |||    || ||||| ||    
T  16404559 taacacatcaaattcgttcttgagaagttttgaatcagatttgaaaacttttcctcaaatggagaacgtcgttgaataatattagaggagttctttgctt 16404460  T
Q  202 cttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatacta 286  Q
    ||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| |||| || | | ||||||||||||| |||||    
T  16404459 cttatggaatgatttgttacaatctctttgtcattgaagttatttgtttgtttcagcacgtggtcagaagaagacaaacagtacta 16404374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 279
Target Start/End: Complemental strand, 17651480 - 17651280
Alignment:
Q  80 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 179  Q
    |||||| |||||||| | | || ||||||||||| |||| ||||| ||| |||  |||| |||||||||  || |||||| |||||||||| ||||| |     
T  17651480 agagtcgttgtttgatgctggccaactcatcaaaatctttcttgataagattttgttcaaatttgaaaatatttcttcaattggataatgtcgttgagta 17651381  T
Q  180 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 278  Q
    ||||| |  |  ||| ||| |||||||||||||||  |||||||||||||||| |||||| |||| || |||||||||||| || ||| |||||||||||    
T  17651380 gtacttgagaaatcccttgcttcttatggaatgatacgttacattctctttgctattaaatttctctgcttgtttctgcacgtggttagaagaagacaaa 17651281  T
Q  279 c 279  Q
    |    
T  17651280 c 17651280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 172 - 383
Target Start/End: Original strand, 17743551 - 17743757
Alignment:
Q  172 gttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aag 270  Q
    ||||||| ||||||| ||  | ||||||| ||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||| || | | |||    
T  17743551 gttgaatagtactagaaaaattctttgttacttgtggaatgatctgttacattctctttgtcattgaacttctttgtttgtttctgcacgtggtcataag 17743650  T
Q  271 aagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaa 370  Q
    |||||||| | ||||||    | | ||||| ||| |   || | | |||||||||||||| | |||||||||||  | |||| |||||||||| ||| ||    
T  17743651 aagacaaatagtactat---caaagctttgaaagag---ttccataaaaagaagacaaaattggtcagagtcacccaaattgctgatgtgtccttcaaaa 17743744  T
Q  371 cttgcttccttca 383  Q
    |||||||||||||    
T  17743745 cttgcttccttca 17743757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 39938421 - 39938547
Alignment:
Q  103 aactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtac-taggaatgtcctttgttt 201  Q
    |||||||||||||| ||||||||||| || ||  || ||||||||||||||| |||| || ||||||| ||||||| |||| | ||||  ||||||  ||    
T  39938421 aactcatcaaattcgtccttgagaagctt-gac-cagatttgaaaactttgcctcaattgtataatgtcgttgaatagtacattggaaaatccttttatt 39938518  T
Q  202 cttatggaatgatctgttacattctcttt 230  Q
    ||||  |||||||||||| ||||||||||    
T  39938519 cttaaagaatgatctgttgcattctcttt 39938547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 6116088 - 6116135
Alignment:
Q  216 tgttacattctctttgccattaaagttctttgtttgtttctgcacatg 263  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  6116088 tgttacattctctttgctattgaagttctttgtttgtttatgcacatg 6116135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 23692500 - 23692648
Alignment:
Q  87 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 186  Q
    ||||||||||||||| |||| ||||| ||  | ||||||||  |||||| || |||| |||  ||||| ||||||||||||||| ||| ||| ||||| |    
T  23692500 ttgtttgaagattgccaactaatcaagttaattcttgagaaactttgat-cagatttaaaatttttgcctcaaatggataatgtcgttcaatagtacttg 23692598  T
Q  187 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccatt 236  Q
        ||| |||| |||||| |||||||||||||||| ||| |||| ||||    
T  23692599 aggagtcttttgcttcttagggaatgatctgttacactctttttgtcatt 23692648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 287
Target Start/End: Complemental strand, 16301122 - 16300977
Alignment:
Q  141 tttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaag 240  Q
    ||||||||||| ||||| ||| |||||||| ||||||| ||||||   |  |||||| || | |||| |||||||| |||||||||||||| || | ||     
T  16301122 tttgaaaacttcgcttctaatagataatgtagttgaatagtactaaataaatccttttttacgtatgaaatgatctattacattctctttgtcaatgaa- 16301024  T
Q  241 ttctttgtttgtttctgcacatgatta-aagaagacaaacaatactat 287  Q
     | | |||||||||||||||||| | | ||||||||| || |||||||    
T  16301023 -tttatgtttgtttctgcacatggtcagaagaagacagacgatactat 16300977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 21546034 - 21545953
Alignment:
Q  103 aactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtact 184  Q
    ||||||||||| || ||||||||||  |||||||   ||||||||| ||||| |||| |||||||||| ||| ||| |||||    
T  21546034 aactcatcaaaatcgtccttgagaatctttgatttggatttgaaaattttgcctcaattggataatgtcgttaaatagtact 21545953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 35150580 - 35150531
Alignment:
Q  207 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttct 256  Q
    ||||| || |||||||||||||||||| || ||||||||| |||||||||    
T  35150580 ggaatcatttgttacattctctttgcctttgaagttctttatttgtttct 35150531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 383
Target Start/End: Original strand, 12843051 - 12843288
Alignment:
Q  144 gaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttc 243  Q
    ||||| ||||| || |||||| ||||| ||||||| ||||||  ||| || |||| |||||  ||||| |||  ||||||||| ||||||||||||||||    
T  12843051 gaaaattttgcctctaatggacaatgtcgttgaatagtactataaatctcatttgcttctttaggaataatccattacattctatttgccattaaagttc 12843150  T
Q  244 tttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtc 342  Q
    ||||||||||| |||| ||| | | |||||||||| ||||||||| ||   ||||||| ||||||  || ||||| |||||||||||||| |||| ||||    
T  12843151 tttgtttgtttttgcatatggtcagaagaagacaagcaatactatcag---aactttgaaagcgatgttgcttcagaagaagacaaaactggtcaaagtc 12843247  T
Q  343 acttatattgttgatgtgtccatcagaacttgcttccttca 383  Q
    ||  | ||||||||||||||  |||| ||||| || |||||    
T  12843248 acccaaattgttgatgtgtctttcagtacttgatttcttca 12843288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 280
Target Start/End: Complemental strand, 10517010 - 10516817
Alignment:
Q  87 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 186  Q
    |||||||||| |||  ||||||||||| || ||||  ||||| ||||||| | |||||||| |||||| |||||||||||||||  ||||||  |||||     
T  10517010 ttgtttgaaggttgtcaactcatcaaaatcgtcctcaagaagctttgatttaaatttgaaa-ctttgcctcaaatggataatgtcattgaataatactat 10516912  T
Q  187 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaaca 280  Q
     || ||| |||  |||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||| || | | |||||||||||||    
T  10516911 aaaagtcattttcttcttatgaaatgatttgttacattctctttgccattgaagttctatgtttgcttctgcacgtggtcagaagaagacaaaca 10516817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 20706627 - 20706743
Alignment:
Q  80 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 179  Q
    |||||| ||||||||||| ||  | | |||||||||| || |||||||| ||||||  | ||||| ||||||||| || |||||||||||| |||||||     
T  20706627 agagtcgttgtttgaagagtgtcagcgcatcaaattcctctttgagaagctttgatgaa-atttgtaaactttgcctctaatggataatgtcgttgaata 20706725  T
Q  180 gtactaggaatgtccttt 197  Q
    ||||||| ||||||||||    
T  20706726 gtactagaaatgtccttt 20706743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 254
Target Start/End: Complemental strand, 35104272 - 35104098
Alignment:
Q  80 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 179  Q
    |||| ||||| ||||||||||| ||||||||||| || | ||||||||| ||||||||| |||||  || ||||  |||||||||   | | |||||||     
T  35104272 agagcccttggttgaagattgccaactcatcaaagtcattcttgagaagctttgattcagatttg-gaattttgtctcaaatggaatctatcgttgaata 35104174  T
Q  180 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgcca-ttaaagttctttgtttgttt 254  Q
    |||| | ||  ||| ||||||| ||| | |||||| |||||||||||||||| || || ||||| |||||||||||    
T  35104173 gtaccaagagcgtcatttgttttttaggtaatgatatgttacattctctttgtcatttgaagttgtttgtttgttt 35104098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 18535293 - 18535368
Alignment:
Q  204 tatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 278  Q
    ||||||||||| ||||||||||| ||| || ||||| || ||||||||||||| ||||| |||| |||||||||||    
T  18535293 tatggaatgatttgttacattctttttacctttaaacttttttgtttgtttctacacattattagaagaagacaaa 18535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 24502687 - 24502648
Alignment:
Q  228 tttgccattaaagttctttgtttgtttctgcacatgatta 267  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  24502687 tttgtcattaaagttctttgtttgtttctgcacatgatta 24502648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 15177608 - 15177576
Alignment:
Q  353 ttgatgtgtccatcagaacttgcttccttcaaa 385  Q
    ||||||||||||||||||||||||||| |||||    
T  15177608 ttgatgtgtccatcagaacttgcttccatcaaa 15177576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 343
Target Start/End: Original strand, 34488093 - 34488327
Alignment:
Q  107 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 206  Q
    |||||||||| | ||||||||||||| || || ||||||||||||||| || |||| |||| || ||||||| |||||||    |||||||| |||||      
T  34488093 catcaaattcgttcttgagaagttttaat-cagatttgaaaactttgcctctaatgaataaagtcgttgaatagtactagaggggtcctttgattctttg 34488191  T
Q  207 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgat--taaagaagacaaacaatactattagtataactttggaag 304  Q
     ||||||||  |||||||||||||| |||| ||||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||    |||||| ||     
T  34488192 tgaatgatccattacattctctttgtcattgaagttctttgtttgtttctgcacgtcgtcaaaaaaaagacaaacaatactatcag---cactttgaaaa 34488288  T
Q  305 cgacatttcttcaaaagaagacaaaactagtcagagtca 343  Q
    |||| || ||||| |||||||||||||| ||||||||||    
T  34488289 cgacgttccttcataagaagacaaaactggtcagagtca 34488327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 118 - 287
Target Start/End: Complemental strand, 17048382 - 17048213
Alignment:
Q  118 tccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctg 217  Q
    ||||||||||  ||||||||||||||||||||||| | | || || ||||||| ||| ||| ||||| |    ||||||||||||||| |||||||||||    
T  17048382 tccttgagaatatttgattcatatttgaaaactttaccttaattg-ataatgtcgttaaatagtacttgaggagtcctttgtttcttagggaatgatctg 17048284  T
Q  218 ttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatactat 287  Q
    ||||||||||||||||||| ||  ||| ||||||||||| ||| || | | || |||||||||||||||||    
T  17048283 ttacattctctttgccattgaatatctatgtttgtttctacacgtggtcagaaaaagacaaacaatactat 17048213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 261
Target Start/End: Original strand, 11833206 - 11833378
Alignment:
Q  87 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 186  Q
    |||||| |||| ||| ||| ||||| |||||||||| | ||| |||||| || |||||||||||| || |||||||||| |||| ||||||| ||||||     
T  11833206 ttgtttaaagagtgccaacacatcagattcttccttaaaaagctttgat-caaatttgaaaactt-gcctcaaatggattatgtcgttgaatggtactat 11833303  T
Q  187 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcaca 261  Q
        || ||||| |||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  11833304 atgagttctttgcttcttagggaatgatatgttacattctctttgtcattgaagttctttgtttatttttgcaca 11833378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 12900700 - 12900632
Alignment:
Q  191 gtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 259  Q
    |||||||| |||||  |||||||| ||||||||||||||| ||||| || |||||||||||||| ||||    
T  12900700 gtcctttgcttctttgggaatgatttgttacattctcttttccattgaaattctttgtttgtttttgca 12900632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 40817446 - 40817403
Alignment:
Q  88 tgtttgaagattgctaactcatcaaattcttccttgagaagttt 131  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  40817446 tgtttgaagattgctaactcatcaacttcatccttgagaagttt 40817403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 12889407 - 12889337
Alignment:
Q  159 aatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctcttt 230  Q
    |||||||||||| ||||||| ||| ||| | | ||||||| ||||| ||||||||| |||||||||||||||    
T  12889407 aatggataatgtcgttgaatagtattag-agtttcctttgcttcttttggaatgatttgttacattctcttt 12889337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 233
Target Start/End: Complemental strand, 36755406 - 36755289
Alignment:
Q  115 tcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgat 214  Q
    |||||||||||||||||||| | | |||||||| ||||||||| ||||||| |    ||||||| |||||||   | || |||| ||||| |||||| ||    
T  36755406 tcttccttgagaagttttgaat-agatttgaaagctttgcttctaatggatgactatgttgaatagtactagaggtttcttttgcttcttttggaataat 36755308  T
Q  215 ctgttacattctctttgcc 233  Q
    ||||| |||||| ||||||    
T  36755307 ctgttgcattctatttgcc 36755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 29966699 - 29966507
Alignment:
Q  87 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 186  Q
    ||||||||| ||| | ||||||||||| ||  | |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |    
T  29966699 ttgtttgaatatttccaactcatcaaaatcacctttgagaagctttgattcatatttgaaaactttgcttcaattggataatgtcgttgaatagtactcg 29966600  T
Q  187 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 278  Q
      |  || |||| ||||||||||||||||  ||||||| |||||||  || || || |||||||| |||| ||| || ||| |||||||||||    
T  29966599 agaaatcatttgcttcttatggaatgatccattacattatctttgcgtttgaatttatttgtttgattctacacgtggttagaagaagacaaa 29966507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 18114603 - 18114753
Alignment:
Q  82 agtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgt 181  Q
    |||| ||||||||||||||| ||| |||||||||| ||||||||||| ||||| || |||||||||||||||| || |||||||| | | ||||||| ||    
T  18114603 agtcattgtttgaagattgccaacgcatcaaattcgtccttgagaagctttga-tcgtatttgaaaactttgcctctaatggatagtatcgttgaatagt 18114701  T
Q  182 actaggaatgtcctttgtttcttatggaatgatctgttacattctctttgcc 233  Q
    |||||   | || |||| ||||| |||||| ||||||| |||||| ||||||    
T  18114702 actagaggtttcttttgcttcttttggaataatctgttgcattctatttgcc 18114753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 259
Target Start/End: Original strand, 30462607 - 30462756
Alignment:
Q  109 tcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatgg 208  Q
    |||||||| ||||| ||||| |||||| ||||||||||| |||||| || |||||||||||| ||| ||| |||| || ||  || |||| |||||||      
T  30462607 tcaaattcatcctttagaagctttgat-catatttgaaagctttgcctctaatggataatgtcgttaaatagtacaagaaaaatcgtttgcttcttatat 30462705  T
Q  209 aatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 259  Q
    |||||| ||||||||| ||||||||||| ||||||||| |||||| |||||    
T  30462706 aatgatttgttacattttctttgccattgaagttctttatttgttactgca 30462756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 16195493 - 16195375
Alignment:
Q  87 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 186  Q
    |||||||| |||| | ||||||||||| || ||||||||||| ||||||| | ||||||||  ||| | |||||| ||||||||  | ||||||| |||     
T  16195493 ttgtttgaggattaccaactcatcaaaatcatccttgagaagctttgatttagatttgaaattttttcctcaaattgataatgttttcgaattgttctat 16195394  T
Q  187 gaatgtcctttgtttctta 205  Q
    ||| ||| |||| ||||||    
T  16195393 gaaagtcatttgcttctta 16195375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 259
Target Start/End: Complemental strand, 21538987 - 21538820
Alignment:
Q  91 ttgaagattgctaactcatcaaattcttccttgagaagttttgattcatattt-gaaaactttgcttcaaatggataatgtggttgaattgtac-tagga 188  Q
    ||||||||||| ||| |||||||||| | ||||||||| || ||| ||||||| ||||||||||| |||| |||||||| | ||||||| || | || ||    
T  21538987 ttgaagattgccaacacatcaaattcgttcttgagaagctt-gat-catattttgaaaactttgcctcaattggataatatcgttgaatagtgcttaaga 21538890  T
Q  189 atgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 259  Q
    |  ||||||| | | ||||||||||| ||||||||| |  ||||| || || |||||||||||||| ||||    
T  21538889 a-atcctttgctgcatatggaatgatttgttacatttttcttgcctttgaatttctttgtttgtttttgca 21538820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 382
Target Start/End: Original strand, 18114825 - 18114894
Alignment:
Q  313 cttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttccttc 382  Q
    ||| |||||||||||||||||| ||||||| |||| | || ||| |||||| |||||  |||||||||||    
T  18114825 ctttaaaagaagacaaaactaggcagagtctcttagaatgctgacgtgtccttcagatattgcttccttc 18114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 14760801 - 14760966
Alignment:
Q  94 aagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtc 193  Q
    |||||||  ||||||||||| |||||||| | ||| ||||||||| |||| |||||||||| || | ||| |||||| ||||||| |||||||||   ||    
T  14760801 aagattgtcaactcatcaaaatcttccttcataagctttgattcagatttaaaaactttgcctcgattgggtaatgtcgttgaatagtactaggagaatc 14760900  T
Q  194 ctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 259  Q
    |||||  ||||| ||||| || ||||||||  | ||||||||||||||||||||| ||||| ||||    
T  14760901 ctttgcctcttaaggaataatttgttacatcatttttgccattaaagttctttgtatgtttttgca 14760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 338
Target Start/End: Original strand, 33546283 - 33546375
Alignment:
Q  243 ctttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcag 338  Q
    ||||||||||||||||||||| | | ||||||||||||||||||    | ||||||| | | ||||| | ||||||||| |||| ||||||||||||    
T  33546283 ctttgtttgtttctgcacatggtcagaagaagacaaacaatact----gcataacttggaatgcgacgtctcttcaaaaaaagaaaaaactagtcag 33546375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 342
Target Start/End: Complemental strand, 25954781 - 25954549
Alignment:
Q  107 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 206  Q
    |||||| ||| || |||||||| |||||| || |||||||||||||||  | ||| ||||||||  ||||||  ||||||    |||||||| ||||| |    
T  25954781 catcaagttcgtcattgagaagctttgat-caaatttgaaaactttgccactaattgataatgtcattgaataatactagatgagtcctttgcttctttt 25954683  T
Q  207 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagc 305  Q
     ||||||||||   |||||  |||||| || ||||||||||||| ||||||||||   | | ||||||||||||||||| ||    |||| |||| ||||    
T  25954682 agaatgatctggaccattccttttgcctttgaagttctttgtttatttctgcacaaagtcataagaagacaaacaatacaat---cataattttgaaagc 25954586  T
Q  306 gacatttcttcaaaagaagacaaaactagtcagagtc 342  Q
    |||||||||| | |||||||||||||| |||| ||||    
T  25954585 gacatttctttagaagaagacaaaactggtcatagtc 25954549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 16687658 - 16687561
Alignment:
Q  87 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtacta 185  Q
    ||||||||||||||  |||||||||||||| | ||| ||||| ||||| ||  ||||||||||||| | || |||||| |||||  |||||| ||||||    
T  16687658 ttgtttgaagattggaaactcatcaaattcatactttagaagctttga-tcggatttgaaaactttccctctaatggacaatgtcattgaatagtacta 16687561  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 11848743 - 11848679
Alignment:
Q  196 ttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 260  Q
    ||||||||||| ||||||  ||||||||| ||||| || || || |||||||||| |||||||||    
T  11848743 ttgtttcttatagaatgaggtgttacattatcttttcctttgaatttctttgtttttttctgcac 11848679  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 22186035 - 22186103
Alignment:
Q  192 tcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 260  Q
    ||||||| |||||||  |||||  |||||||||||||||| | || || | ||||||||||||||||||    
T  22186035 tcctttgcttcttataaaatgacatgttacattctctttgtctttgaattcctttgtttgtttctgcac 22186103  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 2120586 - 2120540
Alignment:
Q  208 gaatgatctgttacattctctttgccattaaagttctttgtttgttt 254  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||    
T  2120586 gaatgatatgttacattctctttgtcattgaagttctttgtttgttt 2120540  T

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