View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15451_high_1 (Length: 486)
Name: NF15451_high_1
Description: NF15451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15451_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 53032303 - 53032010
Alignment:
| Q |
17 |
aaattaaaagaattaagtatgattagttttggttacgaagagagttaaagaagggacaagaaaagagaataggatagaacgtg-------tgtttattat |
109 |
Q |
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| T |
53032303 |
aaattaaaagaattaagtatgattagttttggttatgaagagagttaaagaagggacaagaaaagagaataggatagaaagtggtgaacgtgtgt-ttat |
53032205 |
T |
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| Q |
110 |
gtatgtagtagtaatgaagtgatgtgaaaagggaataatgaggaaaagaaagcggaacaaggaagcaaagagtcagcaatcactttgaaatcccaatatc |
209 |
Q |
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| T |
53032204 |
gtatgtagtagt---gaagtgatgtgaaaagggaataatgaagaaaagaaagcagaacaaggaagcaaagagtcagcaatcactttgaaatcccaatatc |
53032108 |
T |
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| Q |
210 |
caaaagtgaataacaatttgtgtcattgcttatccctctttatagtatctctagttttgctttctactatttctaaatttaatttaataatgagagag |
307 |
Q |
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| T |
53032107 |
caaaagtgaataacaatttgtgtcattgcttatccctctttatagtatctctagttttactttctactatttctaaatttaatttaataatgagagag |
53032010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 53031941 - 53031837
Alignment:
| Q |
374 |
gtataatatatgtccatatcttttcttctcttctctcgtctcatctcatgacata-ttcttccttcaattttggttcatactcctttatcgttttgtttt |
472 |
Q |
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| T |
53031941 |
gtataatatatgtccatatcttttcttctcttctctcgtctcatctcatgacatatttcttccttcaattttggttgatactcctttatcgttttgtttt |
53031842 |
T |
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| Q |
473 |
ccttt |
477 |
Q |
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| T |
53031841 |
ccttt |
53031837 |
T |
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