View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15451_low_2 (Length: 400)

Name: NF15451_low_2
Description: NF15451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15451_low_2
NF15451_low_2
[»] scaffold0958 (1 HSPs)
scaffold0958 (33-105)||(3796-3868)
[»] chr3 (2 HSPs)
chr3 (33-105)||(36620443-36620515)
chr3 (45-107)||(36621040-36621102)
[»] chr6 (4 HSPs)
chr6 (33-104)||(3969840-3969911)
chr6 (33-104)||(24124588-24124659)
chr6 (45-100)||(3969260-3969315)
chr6 (45-103)||(24125186-24125244)
[»] chr1 (2 HSPs)
chr1 (33-103)||(23354353-23354423)
chr1 (45-103)||(23354948-23355006)
[»] chr2 (1 HSPs)
chr2 (268-384)||(32436807-32436921)
[»] chr5 (2 HSPs)
chr5 (33-95)||(9805621-9805683)
chr5 (60-103)||(9804893-9804936)
[»] scaffold1345 (1 HSPs)
scaffold1345 (45-100)||(254-309)


Alignment Details
Target: scaffold0958 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 3868 - 3796
Alignment:
Q  33 actcatccaacagttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgcctt 105  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3868 actcatccaacagttcacatcactcatccaccgtggatgacctacttcactcatccaccctagcatccgcctt 3796  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 36620515 - 36620443
Alignment:
Q  33 actcatccaacagttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgcctt 105  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36620515 actcatccaacagttcacatcactcatccaccgtggatgacctacttcactcatccaccctagcatccgcctt 36620443  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 36621040 - 36621102
Alignment:
Q  45 gttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgccttta 107  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  36621040 gttcacattactcgcccaccgtggatgacctacttcactcatccaccctagcatcccccttta 36621102  T

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Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 3969840 - 3969911
Alignment:
Q  33 actcatccaacagttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgcct 104  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3969840 actcatccaacagttcacatcactcatccaccgtggatgacctacttcactcatccaccctagcatccgcct 3969911  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 24124659 - 24124588
Alignment:
Q  33 actcatccaacagttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgcct 104  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24124659 actcatccaacagttcacatcactcatccaccgtggatgacctacttcactcatccaccctagcatccgcct 24124588  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 3969315 - 3969260
Alignment:
Q  45 gttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatcc 100  Q
    |||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||    
T  3969315 gttcacattactcgcccaccgtggatgacctacttcactcatccaccctagcatcc 3969260  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 24125186 - 24125244
Alignment:
Q  45 gttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgcc 103  Q
    |||||||| ||||  ||||||| ||||| |||||||| |||||||||||||||||||||    
T  24125186 gttcacattactcgcccaccgtagatgacctacttcaatcatccaccctagcatccgcc 24125244  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 23354423 - 23354353
Alignment:
Q  33 actcatccaacagttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgcc 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23354423 actcatccaacagttcacatcactcatccaccgtggatgacctacttcactcatccaccctagcatccgcc 23354353  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 23354948 - 23355006
Alignment:
Q  45 gttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatccgcc 103  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  23354948 gttcacattactcgtccaccgtggatgacctacttcactcatccaccctagcatccgcc 23355006  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 384
Target Start/End: Original strand, 32436807 - 32436921
Alignment:
Q  268 gaaatattactaattacttaggtcttcagcgagaagttcaggaaaatagtaaatgtacattttagtgctgtaaatgatatatgttagattaatttattct 367  Q
    |||||||||| ||||||| ||| ||||||||| ||||| |||  |  ||||||||||||||||||| || | ||||||| ||| | ||||||||||||||    
T  32436807 gaaatattacaaattactaaggccttcagcgaaaagtttaggccatgagtaaatgtacattttagtcctct-aatgatacatgcttgattaatttattct 32436905  T
Q  368 cttttgaatctgaaaac 384  Q
    |||||| ||||||||||    
T  32436906 cttttg-atctgaaaac 32436921  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 9805621 - 9805683
Alignment:
Q  33 actcatccaacagttcacatcactcatccaccgtggatgatctacttcactcatccaccctag 95  Q
    ||||||||||| |||||||| |||||||||||||| ||||  |||||||||||||||||||||    
T  9805621 actcatccaacggttcacattactcatccaccgtgtatgacttacttcactcatccaccctag 9805683  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 9804936 - 9804893
Alignment:
Q  60 ccaccgtggatgatctacttcactcatccaccctagcatccgcc 103  Q
    |||||||||||||  |||||||| ||||||||||||||||||||    
T  9804936 ccaccgtggatgacttacttcacccatccaccctagcatccgcc 9804893  T

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Target: scaffold1345 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 254 - 309
Alignment:
Q  45 gttcacatcactcatccaccgtggatgatctacttcactcatccaccctagcatcc 100  Q
    |||||||| ||||  ||||||||||||| |||||||||||||||| ||||||||||    
T  254 gttcacattactcgcccaccgtggatgacctacttcactcatccatcctagcatcc 309  T

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