View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15451_low_3 (Length: 297)
Name: NF15451_low_3
Description: NF15451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15451_low_3 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 229283 - 229433
Alignment:
| Q |
22 |
gccttcctataccgttttgtaaaggccgttatcgcggtaacgccccgtt-ttttaaaaccttcgtaccttggtggtgaatgctccatccatggtgtga-- |
118 |
Q |
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| T |
229283 |
gccttcctataccgttctgtaacggccgttatcgcggtaacgcccccatcttttaaaaccttcgtaccttggtggtgaatgctccatgcatagtgtgtac |
229382 |
T |
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| Q |
119 |
tccatattt-cctctagtttgaaagttgttgattctgaaaataaaatataa |
168 |
Q |
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| T |
229383 |
tccatattttcctctagtttgaaagttgttgattctgaaaataaaatataa |
229433 |
T |
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Target: scaffold0011; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 229490 - 229554
Alignment:
| Q |
225 |
catcaacagtgactaggagcataaaactacctaatgatagtgatacaattgtgtattcctatgat |
289 |
Q |
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| T |
229490 |
catcaacagtgactaggagcataaaactacctaatgatagtgatacgattgtgtattcctatgat |
229554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 37081209 - 37081261
Alignment:
| Q |
30 |
ataccgttttgtaaaggccgttatcgcggtaacgccccgttttttaaaacctt |
82 |
Q |
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| T |
37081209 |
ataccgttttttaaaggccgttaacacggtaacgccccgttttttaaaacctt |
37081261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 35739466 - 35739415
Alignment:
| Q |
27 |
cctataccgttttgtaaaggccgttatcgcggtaacgccccgttttttaaaa |
78 |
Q |
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| T |
35739466 |
cctataccgttttgtaatggccgttttcgtggtaatgccccattttttaaaa |
35739415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 36033348 - 36033293
Alignment:
| Q |
19 |
gccgccttcctataccgttttgtaaaggccgttatcgcggtaacgccccgtttttt |
74 |
Q |
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| T |
36033348 |
gccgcctgcctataccgttttgtaatagccgttatcgcggtaacaccctgtttttt |
36033293 |
T |
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