View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_high_10 (Length: 218)
Name: NF15452_high_10
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 40514998 - 40514813
Alignment:
| Q |
16 |
atgaacattcatgatgaagagtttnnnnnnntggcatatttcatcttatttcttgtgtgcctaataatgataactctcttaattacaattgcctcttatc |
115 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40514998 |
atgaacattcatgatgaagagtttaagaaaatggcttatttcatcttatttcttgtatgcctaataatgataactctcttaattacaattgcctcttatc |
40514899 |
T |
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| Q |
116 |
tatgtactatacccacttcttcttctactcaacctccttc---tcagcctcttggagtacatgacacaaactccaaccaaaccacaatt |
201 |
Q |
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| T |
40514898 |
tatgtactatacccacttc---ttctactcaacctccttctcatcagcctcttggagtacatgacacaaactccaaccaaaccacaatt |
40514813 |
T |
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