View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_high_5 (Length: 422)
Name: NF15452_high_5
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 43969440 - 43969822
Alignment:
| Q |
18 |
acattggaagatttgatagccgagcacttgagcttgnnnnnnnccacactttctaacccttttcaccattaaagatttgtggataccaaacggaatccta |
117 |
Q |
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| T |
43969440 |
acattggaagatttgatagccgagcacttgagcttgtttttttgcacactttctaacccttttcaccattaaagatttgtggatactaaacggaatccta |
43969539 |
T |
|
| Q |
118 |
tctttgcacgctaaagcaccctatgtttgccaaaagatatttcagtcatattcaagttgacgagacttattaattgtatttacttggtgaaaacaaaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43969540 |
tctttgcacgctaaagcaccctatgtttgccaaaagatatttcagtcatattcaagttgacgagacttattaattgtatttacttggtgaaaacaaaaga |
43969639 |
T |
|
| Q |
218 |
gtttatgtgatatcaatatggcctcactttggatcacacaagtggaggttaaatcgcattaatgttgctagtaccccacacttgtgtgtgaccaaaatga |
317 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43969640 |
gtctatgtgatat------ggcctcactttggatcacacaagtggaggttaaatcgcattaatgttgctagtaccccacacttgtgtgtgaccaaaatga |
43969733 |
T |
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| Q |
318 |
agaaaatcaaagacatcaaaatgcctaatacatgaccactataaactcttcaagactcccattgataacatgaaatataaggttgaaac |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43969734 |
agaaaatcaaagacatcaaaatgcctaatacatgaccactataaactcttcaagactcccattgataacatgaaatataaggttgaaac |
43969822 |
T |
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