View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15452_low_1 (Length: 1087)

Name: NF15452_low_1
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15452_low_1
NF15452_low_1
[»] chr4 (20 HSPs)
chr4 (433-1087)||(25643546-25644199)
chr4 (591-1078)||(20317305-20317784)
chr4 (600-1056)||(22345147-22345594)
chr4 (469-593)||(20316731-20316855)
chr4 (609-875)||(22218147-22218414)
chr4 (468-590)||(22217559-22217681)
chr4 (450-593)||(17661375-17661517)
chr4 (446-593)||(7613137-7613284)
chr4 (677-884)||(48641023-48641231)
chr4 (396-442)||(25645144-25645190)
chr4 (758-871)||(10107305-10107418)
chr4 (911-982)||(11521043-11521114)
chr4 (80-190)||(42193681-42193789)
chr4 (791-934)||(7611466-7611604)
chr4 (895-962)||(10107224-10107292)
chr4 (911-982)||(9737359-9737430)
chr4 (911-982)||(19900757-19900828)
chr4 (596-642)||(22526727-22526773)
chr4 (468-533)||(17380479-17380544)
chr4 (485-538)||(18447999-18448052)
[»] chr1 (18 HSPs)
chr1 (596-1085)||(24306488-24306969)
chr1 (598-812)||(25264237-25264452)
chr1 (767-982)||(17017423-17017634)
chr1 (596-680)||(8986516-8986600)
chr1 (711-821)||(10064245-10064353)
chr1 (430-576)||(34104321-34104468)
chr1 (895-1055)||(33712782-33712944)
chr1 (468-593)||(27910287-27910411)
chr1 (954-1083)||(25958196-25958326)
chr1 (896-934)||(15053071-15053109)
chr1 (195-276)||(20033409-20033490)
chr1 (516-593)||(20033735-20033812)
chr1 (500-590)||(26581025-26581117)
chr1 (468-544)||(10828058-10828134)
chr1 (711-821)||(15053173-15053282)
chr1 (910-982)||(24267630-24267702)
chr1 (764-862)||(13134853-13134951)
chr1 (474-593)||(25264899-25265020)
[»] chr2 (24 HSPs)
chr2 (597-1083)||(25937009-25937491)
chr2 (598-1003)||(12557234-12557629)
chr2 (615-741)||(29883582-29883708)
chr2 (834-1085)||(25070213-25070456)
chr2 (441-589)||(8446055-8446203)
chr2 (468-593)||(12556698-12556825)
chr2 (727-878)||(18539627-18539778)
chr2 (597-934)||(18545431-18545761)
chr2 (468-593)||(25938000-25938125)
chr2 (621-800)||(18553466-18553643)
chr2 (758-983)||(18932408-18932618)
chr2 (426-593)||(34368759-34368922)
chr2 (898-1001)||(29883412-29883515)
chr2 (895-1005)||(8446879-8446989)
chr2 (475-593)||(31427187-31427305)
chr2 (907-982)||(27869876-27869951)
chr2 (675-821)||(30695100-30695245)
chr2 (895-950)||(30695274-30695329)
chr2 (911-982)||(45621731-45621802)
chr2 (195-281)||(25938270-25938355)
chr2 (466-593)||(27870692-27870821)
chr2 (199-302)||(24346361-24346463)
chr2 (1020-1078)||(30695402-30695460)
chr2 (467-593)||(31433527-31433656)
[»] chr8 (18 HSPs)
chr8 (596-982)||(26008232-26008614)
chr8 (895-1060)||(17972274-17972441)
chr8 (468-593)||(26009064-26009189)
chr8 (80-190)||(31552507-31552618)
chr8 (469-592)||(24114793-24114918)
chr8 (454-593)||(26614276-26614415)
chr8 (773-920)||(14006348-14006489)
chr8 (405-591)||(28318367-28318554)
chr8 (557-593)||(17973172-17973208)
chr8 (520-593)||(18829567-18829642)
chr8 (758-870)||(24119466-24119578)
chr8 (711-871)||(17972454-17972611)
chr8 (468-508)||(45264410-45264450)
chr8 (611-807)||(45265153-45265344)
chr8 (483-538)||(5856214-5856269)
chr8 (895-982)||(12268948-12269035)
chr8 (195-266)||(20268125-20268195)
chr8 (195-266)||(21054754-21054824)
[»] chr7 (31 HSPs)
chr7 (592-1052)||(2504296-2504737)
chr7 (405-593)||(2505242-2505429)
chr7 (468-593)||(23008019-23008144)
chr7 (763-934)||(4258600-4258765)
chr7 (677-863)||(2454041-2454225)
chr7 (467-593)||(26133756-26133884)
chr7 (896-1084)||(2953660-2953847)
chr7 (688-820)||(15303243-15303375)
chr7 (922-1054)||(21227293-21227428)
chr7 (618-728)||(26134370-26134480)
chr7 (916-1008)||(19398665-19398758)
chr7 (516-593)||(24751838-24751915)
chr7 (405-505)||(2502510-2502609)
chr7 (468-593)||(10414629-10414756)
chr7 (910-1048)||(9890296-9890435)
chr7 (468-591)||(8158397-8158522)
chr7 (732-869)||(18466287-18466424)
chr7 (767-868)||(21884872-21884973)
chr7 (716-868)||(21912145-21912297)
chr7 (792-934)||(8937976-8938113)
chr7 (922-1001)||(23587790-23587870)
chr7 (897-983)||(9062981-9063067)
chr7 (484-562)||(9863310-9863388)
chr7 (770-863)||(9916813-9916906)
chr7 (770-863)||(9924725-9924818)
chr7 (895-966)||(2453950-2454021)
chr7 (770-868)||(13707766-13707865)
chr7 (911-966)||(16223989-16224044)
chr7 (596-642)||(10480376-10480422)
chr7 (915-1028)||(21102126-21102240)
chr7 (486-588)||(4900934-4901038)
[»] chr5 (23 HSPs)
chr5 (596-915)||(28278699-28279010)
chr5 (651-1034)||(25922438-25922819)
chr5 (614-818)||(23379807-23380011)
chr5 (466-574)||(25934012-25934122)
chr5 (483-593)||(20533070-20533180)
chr5 (915-1028)||(32417200-32417314)
chr5 (632-750)||(27921055-27921174)
chr5 (754-863)||(20533745-20533854)
chr5 (468-573)||(28279720-28279825)
chr5 (446-593)||(17336804-17336949)
chr5 (814-869)||(18223299-18223354)
chr5 (767-868)||(15544332-15544434)
chr5 (470-593)||(17831100-17831225)
chr5 (922-1008)||(27921254-27921341)
chr5 (1028-1081)||(23380213-23380266)
chr5 (764-821)||(17337558-17337615)
chr5 (483-593)||(26252883-26252997)
chr5 (765-821)||(28253619-28253675)
chr5 (611-642)||(15492504-15492535)
chr5 (711-821)||(112286-112395)
chr5 (922-992)||(15470107-15470177)
chr5 (500-562)||(19762195-19762257)
chr5 (229-286)||(17336619-17336676)
[»] chr3 (10 HSPs)
chr3 (753-1079)||(27542602-27542921)
chr3 (466-593)||(18473555-18473682)
chr3 (615-750)||(29755941-29756076)
chr3 (621-738)||(20339446-20339563)
chr3 (895-1051)||(25756784-25756939)
chr3 (516-592)||(21018959-21019037)
chr3 (468-593)||(51119050-51119175)
chr3 (915-1008)||(21083425-21083519)
chr3 (884-934)||(20339619-20339669)
chr3 (601-642)||(25757176-25757217)
[»] chr6 (18 HSPs)
chr6 (591-759)||(26214999-26215167)
chr6 (907-1008)||(33655719-33655820)
chr6 (711-862)||(24187887-24188038)
chr6 (596-750)||(20404299-20404452)
chr6 (895-983)||(9386242-9386330)
chr6 (616-741)||(33655518-33655643)
chr6 (684-879)||(34478810-34479000)
chr6 (483-593)||(10821616-10821728)
chr6 (468-593)||(26214413-26214540)
chr6 (477-593)||(9387065-9387183)
chr6 (485-593)||(10504589-10504699)
chr6 (468-593)||(14882353-14882481)
chr6 (896-941)||(20404510-20404555)
chr6 (758-834)||(15613859-15613935)
chr6 (783-863)||(21547206-21547286)
chr6 (753-869)||(28585731-28585847)
chr6 (758-871)||(9386343-9386455)
chr6 (767-868)||(23088053-23088153)
[»] scaffold0016 (2 HSPs)
scaffold0016 (614-818)||(12454-12658)
scaffold0016 (1028-1081)||(12199-12252)
[»] scaffold1017 (1 HSPs)
scaffold1017 (711-870)||(2911-3069)
[»] scaffold0085 (2 HSPs)
scaffold0085 (758-983)||(22407-22621)
scaffold0085 (557-593)||(23426-23462)
[»] scaffold0032 (1 HSPs)
scaffold0032 (710-794)||(71277-71361)
[»] scaffold0086 (1 HSPs)
scaffold0086 (195-269)||(13084-13158)


Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 433 - 1087
Target Start/End: Complemental strand, 25644199 - 25643546
Alignment:
Q  433 gtttttaaggcctaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaa 532  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  25644199 gtttttaaggcccaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcataatgaaactgatcaagaggaatgcaa 25644100  T
Q  533 gcactatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttattatgaaccctaatttacgtctttgtttcaattacctctaa 632  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25644099 gcactatgaaccgcaagggaggaatctctcctcactctaagtctttagggtatgttttattatgaaccctaatttacgtctttgtttcaattacctctga 25644000  T
Q  633 gagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggtt 732  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  25643999 gagagtaagaaccccacatacatctacgtgcgaaggt-catttccctataggattgacgaccttaagcattgacatgcgtagaaactctggtgtaaggtt 25643901  T
Q  733 gcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcat 832  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25643900 gcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccatacgtacaaacccgtgtgataagtaggtgcaactcaacagctcat 25643801  T
Q  833 agaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaa 932  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||||||    
T  25643800 agaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaatcaatatctgaataatgtttgacaattaattaattccaacaaatgaa 25643701  T
Q  933 tataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgcaaaac 1032  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||||||||    
T  25643700 tataggggactcgaagaaccctaaccactgctaatattctgcaataaaaaatggtttcttataaactctcgttctgagcgaatagattaaattgcaaaac 25643601  T
Q  1033 ccccttttatcttttatttaatttattgtttattgttcccaaataagtaacgtaa 1087  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25643600 cgccttttatcttttatttaatttattgtttattgttcccaaataagtaacgtaa 25643546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 591 - 1078
Target Start/End: Original strand, 20317305 - 20317784
Alignment:
Q  591 attatgaaccctaatttacgtctttgtttcaattacctctaagagagtaagaacccca-catacatctacgtgcgaaggtgcatttccctataggattga 689  Q
    ||||||||||||||| | |||| |||||| || |||||   ||||||||| ||| | | | ||  |||| ||||||| |||||| |||||| | ||||||    
T  20317305 attatgaaccctaatatccgtcattgttttaaataccttcgagagagtaaaaactcaaacgtatctctatgtgcgaaagtgcatctccctacatgattga 20317404  T
Q  690 cgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccaca 789  Q
    |  || ||| || ||||||  ||||||| |||||||||| |||||||||||| || ||| |  ||||||||||| | ||||| || || |||||||||||    
T  20317405 cagccctaaacactaacctatgtagaaaatctggtgtaatgttgcaactcgaaagctggtgtggaataaacccatagctctgggaaagaaaggccccaca 20317504  T
Q  790 cgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaa 889  Q
    |||||||||  ||||||| |||  ||||||||  ||||||  ||| |||||||||||||| ||||||||| ||| ||| ||| |||||||  |           
T  20317505 cgtacaaacttgtgtgatcagtttgtgcaacttgacagctggtaggaaataaaaccccacgaactcatcaattagatataagacgtaaaatga------- 20317597  T
Q  890 tatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaat-aaaaaatggtt 988  Q
     ||| ||||||||||||| |||||||||||| || |||||| |||||||||||| |||||| | ||||   | ||||||||||||||| |||||| | ||    
T  20317598 -atctgaataatgcttgatcattaattaattccagcaaatggatataggggacttgaagaatcttaactgacactaatattctgcaatcaaaaaaggttt 20317696  T
Q  989 acttctaaactctcgctctg-ggcgaatagattaaattgcaaaacccccttttatcttttatttaatttattgtttattgttcccaaataa 1078  Q
    ||| ||||||||||||||||  || || ||| || ||||| |||| ||| |||||||||||||| |||| |  ||||||||||| ||||||    
T  20317697 actcctaaactctcgctctgttgcaaacagactagattgccaaactccc-tttatcttttattttatttgt--tttattgttcctaaataa 20317784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 600 - 1056
Target Start/End: Complemental strand, 22345594 - 22345147
Alignment:
Q  600 cctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttc-cctataggattgacgaccttaa 698  Q
    |||||||||  |||||||||||||||||||| |||||||||||||| ||  |||  ||||  |||||||||  | || ||||||||||||| |||| |||    
T  22345594 cctaatttaaatctttgtttcaattacctctgagagagtaagaaccacatgtaccactactcgcgaaggtg--tgtcgcctataggattgaggaccctaa 22345497  T
Q  699 gcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaac 798  Q
    ||||| |||  |||||||||||  ||||||||||||||||| | |  | |||  ||||||||||| |||| ||||| ||||||||||||||| |||||||    
T  22345496 gcattgacccacgtagaaactcatgtgtaaggttgcaactcaacatctagaggggaataaacccaaacctttgagaaagtaaggccccacac-tacaaac 22345398  T
Q  799 ccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaat 898  Q
       |||||| || ||||||||||||| ||||  ||  ||||||||| |||  ||||||||||||||||||||| ||      |||| |||||||| ||      
T  22345397 gaatgtgatcagcaggtgcaactcaatagctggtaagaaataaaactccatgaactcatcacttaaatagaagacg------taaatccaatatctgagc 22345304  T
Q  899 aatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaac 998  Q
     || | |||||||||||| ||| |||||||| ||||  ||||| | ||||||| |||||| |||| ||  |||  |||| || |   ||| || ||||||    
T  22345303 tatccctgaccattaatttattgcaacaaataaatagtggggattggaagaactctaaccgccgcgaactttcgtcaatcaatacatgttgctcctaaac 22345204  T
Q  999 tctcgctctgggcgaatagattaaattgcaaaacccccttttatcttttatttaattt 1056  Q
    ||| || ||| || |||| | ||||||||||||||||| |||| ||||||||| ||||    
T  22345203 tcttgcactgtgcaaataaaataaattgcaaaaccccc-tttagcttttattttattt 22345147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 469 - 593
Target Start/End: Original strand, 20316731 - 20316855
Alignment:
Q  469 ataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcact 568  Q
    |||||||||||||||||||||||||||||| |||||||||||||   ||||||| |||| ||||| |||| ||||| |||||||| | ||||||||||||    
T  20316731 ataaatacaactcatctcattcataatttttcattcagaatgaagtggttcaagcggaaggcaaggactaggaacttcaagggagaagtctctcctcact 20316830  T
Q  569 ctaagtctttagggtatgttttatt 593  Q
    |||||||| |||||||| |||||||    
T  20316831 ctaagtctctagggtatcttttatt 20316855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 609 - 875
Target Start/End: Original strand, 22218147 - 22218414
Alignment:
Q  609 cgtctttgtttcaattacctctaagagagtaagaacccc-acatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacc 707  Q
    |||| ||||||||| || |||| ||||||| ||||| |  |||||| |||||| ||||| ||| || | |||| ||| ||||| | | |||  | |||||    
T  22218147 cgtcattgtttcaaatatctctgagagagttagaactcatacatacctctacgcgcgaaagtgtatcttcctacaggtttgacaatcataaagactaacc 22218246  T
Q  708 tgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgat 807  Q
     | |||||||||  |||||||||||||||||| |||  |||||  |||||||| || |||| |||||||||||||| |||||||||||||||||||||||    
T  22218247 agtgtagaaacttcggtgtaaggttgcaactccatatctggaggggaataaactcatacctttgagagagtaaggctccacacgtacaaacccgtgtgat 22218346  T
Q  808 aagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgt 875  Q
     ||||||||||| | ||||  |  ||| |||||||||| ||  ||||||||||||| |||||| ||||    
T  22218347 cagtaggtgcaagttaacaattggtaggaaataaaaccacatgaactcatcacttagatagaactcgt 22218414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 468 - 590
Target Start/End: Original strand, 22217559 - 22217681
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 567  Q
    |||||||||||||| |||||||||||||||| |||||| ||  ||   |||||||||||| | ||||||||||| ||  ||||||||| |||||||||||    
T  22217559 tataaatacaactcctctcattcataatttttcattcaaaacaaagtggttcaagaggaaggtaagcactatgagcttaaagggaggagtctctcctcac 22217658  T
Q  568 tctaagtctttagggtatgtttt 590  Q
    ||||||||| |||||||| ||||    
T  22217659 tctaagtctctagggtatttttt 22217681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 450 - 593
Target Start/End: Complemental strand, 17661517 - 17661375
Alignment:
Q  450 ccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaag 549  Q
    ||||||||||| ||| | |||||||||||||  ||||||||| |||||| |||| |||| |||    ||||||||||| |||||||||| || || ||||    
T  17661517 ccaggtggaaaccaagcctataaatacaacttctctcattcagaatttttcatttagaacgaattgattcaagaggaaagcaagcacta-gatcttcaag 17661419  T
Q  550 ggaggaatctctcctcactctaagtctttagggtatgttttatt 593  Q
    |||||| |||||||||||| ||||||| ||| ||||||||||||    
T  17661418 ggaggagtctctcctcactataagtctctagtgtatgttttatt 17661375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 446 - 593
Target Start/End: Complemental strand, 7613284 - 7613137
Alignment:
Q  446 aaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactg 545  Q
    |||||||||||| || ||| | |||||||||||||  ||||||| |||||||| ||||| ||| ||     ||||| ||||||||||| |||| || ||     
T  7613284 aaacccaggtggtaaccaagcctataaatacaacttctctcattgataatttttcattctgaacgacgtgattcaaaaggaatgcaagaactaggagctt 7613185  T
Q  546 caagggaggaatctctcctcactctaagtctttagggtatgttttatt 593  Q
    ||||| |||  |||||||||||||||||||| ||||||||||||||||    
T  7613184 caaggaaggggtctctcctcactctaagtctctagggtatgttttatt 7613137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 677 - 884
Target Start/End: Complemental strand, 48641231 - 48641023
Alignment:
Q  677 cctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagaga 776  Q
    |||| ||||||||||||| | | || ||||  | |||| |||||  |||||||||||||||| || |  || ||  |||||||| |||||||||||||||    
T  48641231 cctacaggattgacgacccttaacactaactcgtgtaggaactccagtgtaaggttgcaacttgacaactgaaggggaataaactcagacctctgagaga 48641132  T
Q  777 gtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgt 875  Q
    |||| |||||| |||||||||   ||||||| |||||||| ||||| ||  ||  || || ||||||||||||| ||||||||||||| ||| |||  ||    
T  48641131 gtaaagccccaaacgtacaaaattgtgtgatcagtaggtgtaactcgacgactggtaggataataaaaccccacgaactcatcacttagataaaagatgt 48641032  T
Q  876 aaaaataaa 884  Q
    |||| ||||    
T  48641031 aaaattaaa 48641023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 25645190 - 25645144
Alignment:
Q  396 aaactgctctttgttacttttaaggggagaaagcccagtttttaagg 442  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  25645190 aaactgctctttgttacttttaaggggagaaagcctagtttttaagg 25645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 758 - 871
Target Start/End: Complemental strand, 10107418 - 10107305
Alignment:
Q  758 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 857  Q
    |||||| |||||| |||||||||| ||| | ||||||||||| ||||||| |||||||||||||  | |||   |||  | ||||||||||| |||||||    
T  10107418 aacccaaacctctaagagagtaagaccctaaacgtacaaacctgtgtgattagtaggtgcaacttgatagcctgtaggtagtaaaaccccacgaactcat 10107319  T
Q  858 cacttaaatagaag 871  Q
    |||||| |||||||    
T  10107318 cacttagatagaag 10107305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 911 - 982
Target Start/End: Original strand, 11521043 - 11521114
Alignment:
Q  911 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    |||||||||||||||||||||||| |||  | || ||||| ||||||||||||||| |||||||||| ||||    
T  11521043 ttaattaatttcaacaaatgaatagaggatattcaaagaatcctaaccaccgctaacattctgcaatcaaaa 11521114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 42193681 - 42193789
Alignment:
Q  80 cgttttcagtggggttatcgctatttcgggccttttgtttcattgttcccttctttagcccctatcgtatgtcttgtatggtatttggcggtttcaaaat 179  Q
    ||||||| |||||||| ||||||| ||||||||||  ||||  ||||||||| || ||| ||||||||| ||| |||||||||||||| ||||| || ||    
T  42193681 cgttttctgtggggtt-tcgctatctcgggcctttgttttcgctgttcccttatt-agctcctatcgtacgtcgtgtatggtatttggtggtttaaatat 42193778  T
Q  180 ataagctgttt 190  Q
    ||||| |||||    
T  42193779 ataagttgttt 42193789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 791 - 934
Target Start/End: Complemental strand, 7611604 - 7611466
Alignment:
Q  791 gtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaa 889  Q
    |||||||| |||||||| |||||||||||||| ||||||  || || ||||||||||||| ||||||||||||  || | ||      | ||  ||||||    
T  7611604 gtacaaactcgtgtgatcagtaggtgcaactcgacagctggtaggataataaaaccccacgaactcatcacttttatgggag------acatttaaccaa 7611511  T
Q  890 tatcagaataatgcttgaccattaattaatttcaacaaatgaata 934  Q
    |  | ||||||| |||||||||||||||||| |||||||||||||    
T  7611510 tccctgaataatacttgaccattaattaattccaacaaatgaata 7611466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 895 - 962
Target Start/End: Complemental strand, 10107292 - 10107224
Alignment:
Q  895 gaataatgcttgaccatt-aattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccg 962  Q
    |||| ||||||||| ||| |||||||| ||||||||||||| |||||| |||||||| | |||||||||    
T  10107292 gaatgatgcttgacaatttaattaattccaacaaatgaatagaggggattcgaagaatcataaccaccg 10107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 911 - 982
Target Start/End: Original strand, 9737359 - 9737430
Alignment:
Q  911 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    |||||||||| ||||||||||||| |||  | || ||||| ||||||| ||||||| |||||||||| ||||    
T  9737359 ttaattaattccaacaaatgaatagaggacattcaaagaatcctaaccgccgctaacattctgcaatcaaaa 9737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 911 - 982
Target Start/End: Complemental strand, 19900828 - 19900757
Alignment:
Q  911 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    |||| ||||| |||||||| |||||||||||  ||||||| ||||||| ||||||| ||| |||||| ||||    
T  19900828 ttaagtaattccaacaaataaatataggggatccgaagaatcctaacctccgctaacattatgcaatcaaaa 19900757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 596 - 642
Target Start/End: Complemental strand, 22526773 - 22526727
Alignment:
Q  596 gaaccctaatttacgtctttgtttcaattacctctaagagagtaaga 642  Q
    |||| |||||||| || | ||||||||||||||||||||||||||||    
T  22526773 gaacgctaatttaagtgtatgtttcaattacctctaagagagtaaga 22526727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 468 - 533
Target Start/End: Complemental strand, 17380544 - 17380479
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaag 533  Q
    |||||||||||||| ||||||||| || ||  |||| |||| ||| | ||||||||||||||||||    
T  17380544 tataaatacaactcctctcattcacaaattctcatttagaacgaagcggttcaagaggaatgcaag 17380479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 18447999 - 18448052
Alignment:
Q  485 tcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcacta 538  Q
    |||||||||||||  |||||||||||||   |||||||||||| ||||||||||    
T  18447999 tcattcataatttctcattcagaatgaagtggttcaagaggaaagcaagcacta 18448052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 596 - 1085
Target Start/End: Original strand, 24306488 - 24306969
Alignment:
Q  596 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacct 695  Q
    ||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||| |  || || |    ||||||||| | ||||||||| ||||||||     
T  24306488 gaaccctaatttaggtcattgtttcaattacctctgagagactaagaaccccacctttatgtatg----aaggtgcatcttcctataggaatgacgaccc 24306583  T
Q  696 taagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtaca 795  Q
    ||| |||||||  || |||||||| | ||||||||||||||||| | || |||||  ||||||||| ||||||| |||||||||||||||||||||||||    
T  24306584 taaacattaactcgcatagaaacttttgtgtaaggttgcaactcaacagctggagtggaataaacctagacctccgagagagtaaggccccacacgtaca 24306683  T
Q  796 aacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcag 895  Q
    || ||||||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| | |||||      |||||||||||||  |    
T  24306684 aatccgtgtgattagtaggtgcaactcaacaactgataggaaataaaaccccacgaactcatcacttaaacataagtc------ataaaaccaatatttg 24306777  T
Q  896 aataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttcta 995  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||  |||||| ||| | |||| ||||  |||||||||||    
T  24306778 aataatgtttgatcattaattaatttcaacaaattaatataggggattcaaagaatcctaaccgtcgctaacatttttcaatcaaaacaggttacttcta 24306877  T
Q  996 aactctcgctctgggcgaatagattaaattgcaaaacccccttttatcttttatttaattta--ttgtttattgttcccaaataagtaacgt 1085  Q
    |||||| |||||| || || ||| |||||||||||| || | |||||||||||||| |||||   |||||  ||||||||||||||||||||    
T  24306878 aactcttgctctgtgcaaagagactaaattgcaaaaacctcctttatcttttattttatttactgtgttttctgttcccaaataagtaacgt 24306969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 598 - 812
Target Start/End: Complemental strand, 25264452 - 25264237
Alignment:
Q  598 accctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctta 697  Q
    ||||||||||| ||||||||||||| ||||| |  |||||||||||| |||| ||||||||| ||| |||||||||  |  |||||||||||||||| ||    
T  25264452 accctaatttaagtctttgtttcaaatacctttgggagagtaagaactccacgtacatctacatgcaaaggtgcatcccattataggattgacgacccta 25264353  T
Q  698 agcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaat-aaacccagacctctgagagagtaaggccccacacgtacaa 796  Q
      |||| ||   || ||||||| ||||||||||||||||||||| ||||||||  |||| |||| || ||||||||| ||||||||||||| ||||||||    
T  25264352 tacattgacgcacgaagaaactttggtgtaaggttgcaactcgacagttggaggggaataaaactcatacctctgagtgagtaaggccccatacgtacaa 25264253  T
Q  797 acccgtgtgataagta 812  Q
    || | |||||| ||||    
T  25264252 actcatgtgattagta 25264237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 767 - 982
Target Start/End: Original strand, 17017423 - 17017634
Alignment:
Q  767 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 866  Q
    |||||||||| |||| ||||| ||||||||||||||||||| |||||  ||||||| || |||  ||| |||||||||||||| ||||| ||||||||||    
T  17017423 ctctgagagattaagtccccatacgtacaaacccgtgtgattagtagccgcaactcgactgctggtaggaaataaaaccccacgaactcgtcacttaaat 17017522  T
Q  867 agaagtcgtaaaaataaaaccaatatcagaataatgcttgaccatt--aattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgct 964  Q
    ||||| ||      ||||| ||||||| ||| |||||||||| |||   ||||| | |||||||| |||| |||||| |||||||||||| ||  || ||    
T  17017523 agaaggcg------taaaatcaatatctgaacaatgcttgactattgatattaaatccaacaaataaatagaggggattcgaagaacccttactgccact 17017616  T
Q  965 aatattctgcaataaaaa 982  Q
    || |||||||||| ||||    
T  17017617 aacattctgcaatcaaaa 17017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 596 - 680
Target Start/End: Complemental strand, 8986600 - 8986516
Alignment:
Q  596 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttcccta 680  Q
    ||||||||||||| |||| ||||||||||||||| |||| ||||| |||||||| |||||||| |||||||||||||| ||||||    
T  8986600 gaaccctaatttaagtctgtgtttcaattacctcaaagatagtaataaccccacgtacatctatgtgcgaaggtgcatctcccta 8986516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 711 - 821
Target Start/End: Original strand, 10064245 - 10064353
Alignment:
Q  711 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 810  Q
    |||||||||||| ||||||||||||||| || || | |||   ||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||    
T  10064245 gtagaaactctg-tgtaaggttgcaact-gacagctagagggaaatgaacccaaacctctgagagagcaagaccccacacgtacaaacccgtgtgatcag 10064342  T
Q  811 taggtgcaact 821  Q
    |||||| ||||    
T  10064343 taggtgtaact 10064353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 430 - 576
Target Start/End: Complemental strand, 34104468 - 34104321
Alignment:
Q  430 ccagtttttaaggcctaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaac-tgttcaagaggaat 528  Q
    |||||||||||| || ||||| |||||||||  |||| |||||||| |||| ||||||||||| ||||| ||||||||| ||||| |||||| ||||||     
T  34104468 ccagtttttaagtccgaaacc-aggtggaaacaaaacctataaatagaacttatctcattcat-atttttcattcagaacgaaacttgttcatgaggaag 34104371  T
Q  529 gcaagcactatgaactgcaagggagga--atctctcctcactctaagtct 576  Q
    || ||||||| || || ||| ||||||   ||||||||||||||||||||    
T  34104370 gccagcactaggagcttcaacggaggactctctctcctcactctaagtct 34104321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 895 - 1055
Target Start/End: Complemental strand, 33712944 - 33712782
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa--atggttactt 992  Q
    ||||||| ||||||||||||||| || ||| | ||||||| |||||| || |||||||||||||| |||||| |||||||||| ||||  | | | |||     
T  33712944 gaataatacttgaccattaattatttccaatagatgaatagaggggattcaaagaaccctaaccatcgctaacattctgcaatcaaaaccaggttaactc 33712845  T
Q  993 ctaaactctcgctctg-ggcgaatagattaaattgcaaaacccccttttatcttttatttaatt 1055  Q
    ||||||||| ||| ||  |  || | |||||||||||||||| || ||||||||||||||||||    
T  33712844 ctaaactcttgctatgttggaaacatattaaattgcaaaacctcc-tttatcttttatttaatt 33712782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 468 - 593
Target Start/End: Complemental strand, 27910411 - 27910287
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 567  Q
    |||||||||||||  |||||||||| |||||  ||| |||| |||   |||||||||||| |||| ||||  || || |||||||||| |||||||||||    
T  27910411 tataaatacaacttgtctcattcattattttt-attaagaacgaagtggttcaagaggaaggcaaacacttggagcttcaagggaggagtctctcctcac 27910313  T
Q  568 tctaagtctttagggtatgttttatt 593  Q
    | ||||||| || |||||||||||||    
T  27910312 tttaagtctctaaggtatgttttatt 27910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 954 - 1083
Target Start/End: Complemental strand, 25958326 - 25958196
Alignment:
Q  954 taaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgc-aaaacccccttttatcttttattta 1052  Q
    ||||| ||||||| ||||| || | |||| || ||||||||||||||||| |||  || || | |||||||||| |||| || | ||||||||||||||     
T  25958326 taaccgccgctaacattcttcattcaaaactgattacttctaaactctcgttctaagcaaacatattaaattgcaaaaatcctcatttatcttttattt- 25958228  T
Q  1053 atttattg-tttattgttcccaaataagtaac 1083  Q
    ||| |||| |||||||||||||||||||||||    
T  25958227 attaattgttttattgttcccaaataagtaac 25958196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 896 - 934
Target Start/End: Complemental strand, 15053109 - 15053071
Alignment:
Q  896 aataatgcttgaccattaattaatttcaacaaatgaata 934  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15053109 aataatgcttgaccattaattaatttcaacaaatgaata 15053071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 20033409 - 20033490
Alignment:
Q  195 aaagggagaaattctgttctcaagtcctaatacaatcttatatgaaagaaaacactc-aaatgacgaagaaacatgtgattac 276  Q
    ||||||||||||| ||||||||||||| || || ||||||||| |||| |||||| | ||| |||||||||||||||||||||    
T  20033409 aaagggagaaattatgttctcaagtcccaagac-atcttatattaaagcaaacacccaaaaagacgaagaaacatgtgattac 20033490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 516 - 593
Target Start/End: Original strand, 20033735 - 20033812
Alignment:
Q  516 gttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttatt 593  Q
    |||||||||||| |||| || || || || |||||||||| ||||  |||||||||||||| ||||||||||||||||    
T  20033735 gttcaagaggaaggcaaccattaggagcttcaagggaggagtctcctctcactctaagtctctagggtatgttttatt 20033812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 500 - 590
Target Start/End: Complemental strand, 26581117 - 26581025
Alignment:
Q  500 cattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctcactctaagtctttagggtatgtttt 590  Q
    |||||||||| || | |||||||||||| |||||||||| || || ||||||| || ||  |||||||| ||||||||| |||||||||||||    
T  26581117 cattcagaataaagcggttcaagaggaaggcaagcactaggagcttcaagggatgagtctttctcctcaatctaagtctctagggtatgtttt 26581025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 468 - 544
Target Start/End: Complemental strand, 10828134 - 10828058
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaact 544  Q
    |||||||||||||| ||||||||| |||| | |||||| ||||||   ||||||||||||||||| ||||| |||||    
T  10828134 tataaatacaactcctctcattcaaaattattcattcataatgaagtagttcaagaggaatgcaaacactaggaact 10828058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 711 - 821
Target Start/End: Complemental strand, 15053282 - 15053173
Alignment:
Q  711 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 810  Q
    |||||||||| |||||||| |||||||| || || |||||   ||| ||| || ||||||||||||||||| | | |||||||||||||| |||||| |     
T  15053282 gtagaaactccggtgtaagattgcaact-gacaggtggaggtcaatgaactcaaacctctgagagagtaagactctacacgtacaaacccatgtgatcaa 15053184  T
Q  811 taggtgcaact 821  Q
    ||| |||||||    
T  15053183 tagttgcaact 15053173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 910 - 982
Target Start/End: Original strand, 24267630 - 24267702
Alignment:
Q  910 attaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    ||||||||||| |||||||| |||| |||||| || ||||| |||||||  |||||| |||||||||| ||||    
T  24267630 attaattaattccaacaaattaatagaggggattcaaagaatcctaaccgtcgctaacattctgcaatcaaaa 24267702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 764 - 862
Target Start/End: Original strand, 13134853 - 13134951
Alignment:
Q  764 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcactt 862  Q
    ||||||| |||||||||| |||| ||||||||||||| |||||| ||||| | |||||  ||||||  || || ||||||||| ||| ||||||||||||    
T  13134853 gacctctaagagagtaagtcccc-cacgtacaaacccatgtgatcagtagattcaacttgacagctggtaggataataaaaccgcacgaactcatcactt 13134951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 474 - 593
Target Start/End: Complemental strand, 25265020 - 25264899
Alignment:
Q  474 tacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaat--ctctcctcactcta 571  Q
    |||||||| |||||||||||||||| ||| ||||| ||| |   ||||||||||  ||||||||| || || ||||| | || |  ||||| ||| ||||    
T  25265020 tacaactcctctcattcataatttttcatacagaacgaagcgaatcaagaggaagacaagcactaggagcttcaaggtaagagttgctctcgtcattcta 25264921  T
Q  572 agtctttagggtatgttttatt 593  Q
    ||||| || |||||||||||||    
T  25264920 agtctctaaggtatgttttatt 25264899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 5e-93; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 597 - 1083
Target Start/End: Complemental strand, 25937491 - 25937009
Alignment:
Q  597 aaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctt 696  Q
    |||||||||||| ||| ||||||||||||||||| |||||| |||||| |||||||| |||||| |||||||||||| |||||| | |||||| |||| |    
T  25937491 aaccctaatttaagtcattgtttcaattacctctgagagaggaagaactccacatacctctacgcgcgaaggtgcatgtccctacaagattgatgaccct 25937392  T
Q  697 aagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaa 796  Q
    ||||||| | ||| ||||| |||||| |||||||||| |||| || || |||||  |||||||||||| ||||| |||||||||||||||||||| ||||    
T  25937391 aagcattgaactgtgtagacactctgatgtaaggttgaaacttgacagatggagtggaataaacccagtcctctaagagagtaaggccccacacgaacaa 25937292  T
Q  797 acccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcaga 896  Q
    |  |||||||| |||||||||||||| | || |  ||  |||||||| ||||||||||||||||||||||| ||| ||      ||||| ||| ||| ||    
T  25937291 aaacgtgtgattagtaggtgcaactcgatagttggtaagaaataaaatcccacaaactcatcacttaaataaaagacg------taaaatcaacatctga 25937198  T
Q  897 ataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaa 996  Q
    |||||||||||||||||||||||| ||||||||||||| | |||| |||| ||| ||||||| |||| || |||||||||| ||||   |||| | ||||    
T  25937197 ataatgcttgaccattaattaattccaacaaatgaataaaagggattcgaggaatcctaaccgccgcaaacattctgcaatcaaaacatgttattcctaa 25937098  T
Q  997 actctcgctc-tgggcgaatagattaaattgcaaaacccccttttatctttta-tttaatttattgtttattgttcccaaataagtaac 1083  Q
    ||||| ||||    |  || ||| |||||||||||| || ||||||||||||| |||| |||||||||||||||||| |||||||||||    
T  25937097 actcttgctcaactgtaaacagactaaattgcaaaatcctcttttatcttttattttattttattgtttattgttcctaaataagtaac 25937009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 598 - 1003
Target Start/End: Original strand, 12557234 - 12557629
Alignment:
Q  598 accctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctta 697  Q
    ||||||||||| |||||| |||||| ||||| | ||| | ||||||||||||||||||||| | | ||||||||||  || |||| ||||||||||||||    
T  12557234 accctaatttaagtctttctttcaactacctttgagataataagaaccccacatacatctatgagtgaaggtgcatc-ccatatatgattgacgacctta 12557332  T
Q  698 agcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaa 797  Q
    |||||| ||  ||||| |||||  |||||||| ||||||||||| || |||||  |||||||| || |||| ||||||| ||||| || |||||||||||    
T  12557333 agcattgactcgcgtaaaaact--ggtgtaagattgcaactcgacagctggaggggaataaactcatacctttgagagaataaggtcc-acacgtacaaa 12557429  T
Q  798 cccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaa 897  Q
    |  ||||||| |||||||||||| ||||| ||  || |||||| ||||||||||||||||||||||||||||||      | || ||||||||||| ||     
T  12557430 catgtgtgattagtaggtgcaacgcaacaactggtataaaatataaccccacaaactcatcacttaaatagaag------acatcaaaccaatatctgac 12557523  T
Q  898 taatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaa 997  Q
    ||||| ||||||||||||||||| ||||||||||| | |||||   ||||||| |||| |  | ||||| |||||||||| ||||  | |||||||||||    
T  12557524 taatgtttgaccattaattaattccaacaaatgaacaaaggggctccgaagaatcctagctgctgctaacattctgcaatcaaaacagattacttctaaa 12557623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 615 - 741
Target Start/End: Complemental strand, 29883708 - 29883582
Alignment:
Q  615 tgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtag 714  Q
    |||||||||||||| | ||||||||||||||| ||||||||||| || |||||||||||  ||||||||||||||||||| |||||||| || ||| |||    
T  29883708 tgtttcaattacctttgagagagtaagaacccgacatacatctatgttcgaaggtgcatccccctataggattgacgaccctaagcattgacgtgcatag 29883609  T
Q  715 aaactctggtgtaaggttgcaactcga 741  Q
    ||||| ||||||||||||||| |||||    
T  29883608 aaactttggtgtaaggttgcagctcga 29883582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 834 - 1085
Target Start/End: Complemental strand, 25070456 - 25070213
Alignment:
Q  834 gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaat 933  Q
    |||||||||||||||| ||||||||||||||||||||| |      |||||   |||||  ||||||||||||||||  ||||||||  |||||||||||    
T  25070456 gaaaataaaaccccacgaactcatcacttaaatagaaggc------ataaactaaatatttgaataatgcttgaccaa-aattaattctaacaaatgaat 25070364  T
Q  934 ataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgcaaaacc 1033  Q
    | |||| | |||||||| | ||||| ||||||| ||  |||||| ||||   |||||||| ||| ||||||| || || || | |||||||| ||||||     
T  25070363 agagggaattcgaagaatcataaccgccgctaacatcttgcaatcaaaacatgttacttccaaattctcgctttgagcaaacaaattaaatttcaaaact 25070264  T
Q  1034 cccttttatcttttatttaatttattgtt-tattgttcccaaataagtaacgt 1085  Q
    ||| ||||||||| |||||  ||||||||  ||||||||||||||||||||||    
T  25070263 cccatttatctttgattta--ttattgttccattgttcccaaataagtaacgt 25070213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 441 - 589
Target Start/End: Original strand, 8446055 - 8446203
Alignment:
Q  441 ggcctaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatg 540  Q
    |||| |||| |||||||||||||| | |||||||||||||| |||||||||||||||| |||||  || ||||| |||||| | ||| |||| |||||||    
T  8446055 ggcccaaactcaggtggaaatcaagcctataaatacaactc-tctcattcataatttttcattcgaaacgaaacagttcaataagaaggcaaacactatg 8446153  T
Q  541 aactgcaagggaggaat-ctctcctcactctaagtctttagggtatgttt 589  Q
    | || |||||||||| |  ||||||||||||| |||| ||||||||||||    
T  8446154 agcttcaagggaggagtattctcctcactctatgtctctagggtatgttt 8446203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 468 - 593
Target Start/End: Original strand, 12556698 - 12556825
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctc 565  Q
    |||||||| || || |||||||||||||||| |||||| |||||| | ||||||||| || |||||| ||| || || |||||||||| ||  |||||||    
T  12556698 tataaataaaattcctctcattcataatttttcattcaaaatgaagcggttcaagagaaaggcaagcgctaggagcttcaagggaggagtctatctcctc 12556797  T
Q  566 actctaagtctttagggtatgttttatt 593  Q
    ||||||||||| ||||||||||||||||    
T  12556798 actctaagtctctagggtatgttttatt 12556825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 727 - 878
Target Start/End: Original strand, 18539627 - 18539778
Alignment:
Q  727 aaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaaca 826  Q
    |||||| ||||| || || |||||  |||||||||| |||||||||||||||||||| ||||| |||||||||| |||||| | |||||| ||||||| |    
T  18539627 aaggttacaacttgaaagctggaggggaataaaccctgacctctgagagagtaaggcaccacatgtacaaacccatgtgatcactaggtgaaactcaaga 18539726  T
Q  827 gctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaa 878  Q
      |  ||| ||||||||||| |  |||||||||| |||||| ||| ||||||    
T  18539727 aatgctaggaaataaaaccctaggaactcatcacgtaaataaaagacgtaaa 18539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 597 - 934
Target Start/End: Original strand, 18545431 - 18545761
Alignment:
Q  597 aaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctt 696  Q
    |||||||||||| || ||| ||| |||||||||   ||||||||||||||||| ||| |||||| | |||||||||| ||| || || |||| ||||| |    
T  18545431 aaccctaatttaagtattttttt-aattacctccgtgagagtaagaaccccacgtacctctacgcgtgaaggtgcatctccatacagtattgtcgaccct 18545529  T
Q  697 aagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaa 796  Q
    |||| || || |||||||  |||||| ||||||| | ||||| || ||   |||  ||||||||||| || ||| |||||||||||||||||   |||||    
T  18545530 aagctttgacatgcgtagtcactctgttgtaagggtacaacttgacagagtgaggggaataaacccatacttcttagagagtaaggccccacgtctacaa 18545629  T
Q  797 acccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcaga 896  Q
    |||  |||||| | ||  || |||||||||  |  |   |||| |||||| || ||||||||||||||||| ||| ||      |||| |||||||  ||    
T  18545630 accgatgtgatcaatatctgaaactcaacatatgctttgaaatcaaacccaacgaactcatcacttaaataaaagacg------taaatccaatatatga 18545723  T
Q  897 ataatgcttgaccattaattaatttcaacaaatgaata 934  Q
    |||||| || |||||||||| |||  ||||||||||||    
T  18545724 ataatgatttaccattaatttattcaaacaaatgaata 18545761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 468 - 593
Target Start/End: Complemental strand, 25938125 - 25938000
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 567  Q
    |||| ||||||||| |||||||||||| ||| ||||||||| ||| | |||||||| ||||||||| |||| || ||  ||||||||| ||||||||||     
T  25938125 tatacatacaactcctctcattcataaattttcattcagaacgaagcggttcaagacgaatgcaagtactaggatctttaagggaggagtctctcctcat 25938026  T
Q  568 tctaagtctttagggtatgttttatt 593  Q
    |||||||||   | ||||||||||||    
T  25938025 tctaagtctccggcgtatgttttatt 25938000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 621 - 800
Target Start/End: Original strand, 18553466 - 18553643
Alignment:
Q  621 aattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactc 720  Q
    ||||||||| | ||||||||||||||||||||| |||||  | |||||||||| ||| || || |||| ||||| ||||  ||||| |||||||| ||||    
T  18553466 aattacctccatgagagtaagaaccccacatacctctacacgtgaaggtgcatctccatacagtattgtcgaccctaagttttaacatgcgtagacactc 18553565  T
Q  721 tggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaaccc 800  Q
       |||||| || ||||| || ||   |||  |||||||||||||| |||  ||||||||||||||| | ||||||||||    
T  18553566 ctttgtaagattacaacttgacagaatgaggggaataaacccagacttct--gagagtaaggccccatatgtacaaaccc 18553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 758 - 983
Target Start/End: Complemental strand, 18932618 - 18932408
Alignment:
Q  758 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 857  Q
    |||||| |||| |||||||||||| |||||||| ||||||||| |||||| |||| ||||| ||  ||||||  |||  | ||||||||||| |||||||    
T  18932618 aacccaaacctttgagagagtaagaccccacacctacaaacccatgtgatcagtatgtgcagctttacagctggtaggcagtaaaaccccacgaactcat 18932519  T
Q  858 cacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaac 957  Q
    | |||| | ||||| | ||| ||            | ||||||||||||| |||||||||||| ||||||||||||| ||| || |||||    ||||||    
T  18932518 cccttagagagaagacataagaaa-----------ctgaataatgcttgaacattaattaattccaacaaatgaataaaggagattcgaa----cctaac 18932434  T
Q  958 caccgctaatattctgcaataaaaaa 983  Q
     ||| |||| ||||||||||||||||    
T  18932433 taccactaacattctgcaataaaaaa 18932408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 426 - 593
Target Start/End: Complemental strand, 34368922 - 34368759
Alignment:
Q  426 aagcccagtttttaaggcctaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagagg 525  Q
    ||||||||||||| |  ||||||||||  |||||| | ||| |||||||||||||| ||||||||| ||  |  |||||| |  ||| | ||||||||||    
T  34368922 aagcccagtttttcaa-cctaaacccaattggaaa-ctaacatataaatacaactcctctcattcaaaaaatgtcattcatagcgaagcggttcaagagg 34368825  T
Q  526 aatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttatt 593  Q
    || ||||| ||||  | || |||||||||| ||||  |||||||||||||| ||||||||||||||||    
T  34368824 aaggcaagtactagaagcttcaagggaggagtctc--ctcactctaagtctctagggtatgttttatt 34368759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 898 - 1001
Target Start/End: Complemental strand, 29883515 - 29883412
Alignment:
Q  898 taatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaa 997  Q
    ||||| ||||||||||||||||| ||||||||||||| | | || |||||||| ||||||| ||  ||| ||| |||||| ||||  ||||||| |||||    
T  29883515 taatgtttgaccattaattaattccaacaaatgaatagatgagattcgaagaatcctaaccgccattaacattttgcaatcaaaacaggttactcctaaa 29883416  T
Q  998 ctct 1001  Q
    ||||    
T  29883415 ctct 29883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 895 - 1005
Target Start/End: Original strand, 8446879 - 8446989
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttct 994  Q
    |||||||| |||||||||| |||||| ||||||||||||| |||||| || || || ||||||| || |||  ||||| |||| || |  ||||||||||    
T  8446879 gaataatgattgaccattatttaattccaacaaatgaatagaggggattcaaataatcctaaccgcctctatcattctacaatcaacataggttacttct 8446978  T
Q  995 aaactctcgct 1005  Q
    |||||| ||||    
T  8446979 aaactcccgct 8446989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 475 - 593
Target Start/End: Complemental strand, 31427305 - 31427187
Alignment:
Q  475 acaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagt 574  Q
    ||||||||||| ||| | ||||||  ||||| || ||| |  ||||||||||| |||  |||||||| || |||||||||  ||||||||||||| ||||    
T  31427305 acaactcatcttattaacaattttttattcaaaacgaagcgattcaagaggaaggcagacactatgagcttcaagggaggtctctctcctcactccaagt 31427206  T
Q  575 ctttagggtatgttttatt 593  Q
    || ||| ||||||||||||    
T  31427205 ctctagagtatgttttatt 31427187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 907 - 982
Target Start/End: Complemental strand, 27869951 - 27869876
Alignment:
Q  907 accattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    ||||||||||| ||||||||||| |||| |||||| || |||||  |||||| ||||||| |||||||||| ||||    
T  27869951 accattaattactttcaacaaattaatagaggggattcaaagaattctaaccgccgctaacattctgcaatcaaaa 27869876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 675 - 821
Target Start/End: Original strand, 30695100 - 30695245
Alignment:
Q  675 tccctataggattgacgaccttaagcatt-aacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgag 773  Q
    |||||||||||||||| ||| ||| || | |||||  |||||||| |  |||||||||||||||| || || |||||   ||| |||||| |||| ||||    
T  30695100 tccctataggattgacaaccctaaacaatgaacctt-gtagaaacacaagtgtaaggttgcaact-gacagctggagggcaatgaacccaaacctttgag 30695197  T
Q  774 agagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 821  Q
    |||||||  ||||| ||| |||||| |||||||| |||||||||||||    
T  30695198 agagtaataccccagacgaacaaactcgtgtgatcagtaggtgcaact 30695245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 895 - 950
Target Start/End: Original strand, 30695274 - 30695329
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaa 950  Q
    |||||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||    
T  30695274 gaataatgcttgaccattaactaattccaacaaatgaaaagaggagactcgaagaa 30695329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 911 - 982
Target Start/End: Original strand, 45621731 - 45621802
Alignment:
Q  911 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    |||||||||| ||||||||||||| |||||| || ||||| | ||||| ||||||| |||||||||| ||||    
T  45621731 ttaattaattccaacaaatgaatagaggggattcaaagaatcttaaccgccgctaacattctgcaatcaaaa 45621802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 25938355 - 25938270
Alignment:
Q  195 aaagggagaaattctgttctcaagtcctaatacaatcttatatgaaagaaaacactcaaatgacgaagaaacatgtgattacgcgcg 281  Q
    |||||||| |||| ||||| |||||||||| ||| |||||||||||||  ||||| |||| |||||||||| |  ||||||||||||    
T  25938355 aaagggaggaattatgttcccaagtcctaagaca-tcttatatgaaagggaacacacaaaagacgaagaaataattgattacgcgcg 25938270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 466 - 593
Target Start/End: Complemental strand, 27870821 - 27870692
Alignment:
Q  466 cttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatct--ctcc 563  Q
    ||||||||||  |||| ||||||||||||| ||   ||||||| |||   ||| |||||||| |||| ||||| || || |||| ||||| |||  ||||    
T  27870821 cttataaatatcactcctctcattcataatatttttttcagaacgaagtggtttaagaggaaggcaaacactaagagcttcaagtgaggagtctttctcc 27870722  T
Q  564 tcactctaagtctttagggtatgttttatt 593  Q
    ||||||||||||| |||||||| |||||||    
T  27870721 tcactctaagtctctagggtatattttatt 27870692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 24346361 - 24346463
Alignment:
Q  199 ggagaaattctgttctcaagtcctaatacaatcttatatgaaagaaaacactcaaatgacgaagaaacatgtgattacgcgcgagaaaagaatactgatg 298  Q
    ||||||||| | ||| ||||||| || ||| ||||||| | ||||||||||  ||| ||| |||||||||| ||||||||| | ||||| || |||||||    
T  24346361 ggagaaattatattcccaagtcccaagaca-tcttatacggaagaaaacacctaaaggacaaagaaacatgcgattacgcgtgggaaaacaacactgatg 24346459  T
Q  299 cgcc 302  Q
    ||||    
T  24346460 cgcc 24346463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1020 - 1078
Target Start/End: Original strand, 30695402 - 30695460
Alignment:
Q  1020 taaattgcaaaacccccttttatcttttatttaatttattgtttattgttcccaaataa 1078  Q
    |||||||||||||||| ||||||||| |||||| ||||||  ||| | |||||||||||    
T  30695402 taaattgcaaaacccctttttatcttctatttattttatttcttactattcccaaataa 30695460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 467 - 593
Target Start/End: Complemental strand, 31433656 - 31433527
Alignment:
Q  467 ttataaatacaactcatctcattcataatt-ttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc--c 563  Q
    |||||||||||||| |||| ||| | |||| ||  ||||| || ||| | ||| |||||||| |||||||||| || || |||||||||  ||||||  |    
T  31433656 ttataaatacaacttatcttattaacaattgttttattcaaaacgaagcggtttaagaggaaggcaagcactaggagcttcaagggaggtctctctctcc 31433557  T
Q  564 tcactctaagtctttagggtatgttttatt 593  Q
    |||||| |||||| ||| ||||||||||||    
T  31433556 tcactccaagtctctagagtatgttttatt 31433527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 2e-70; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 596 - 982
Target Start/End: Complemental strand, 26008614 - 26008232
Alignment:
Q  596 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccc-cacatacatctacgtgcgaaggtgcatttccctataggattgacgacc 694  Q
    ||||| ||||||| ||| ||||||||| | ||||| ||||||||||||||| ||||||| ||||||  ||||||| ||| |||||| | |||||| ||||    
T  26008614 gaaccataatttaagtcattgtttcaaatgcctctgagagagtaagaacccacacatacctctacgcacgaaggtacatctccctacatgattgatgacc 26008515  T
Q  695 ttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtac 794  Q
     |||||||||||| |||| ||||||||||||||||||| ||||| || |  |||||  ||||||||| | |  | |||||||||||||||||||||||||    
T  26008514 ctaagcattaacccgcgtggaaactctggtgtaaggtttcaacttgacatctggaggggaataaacctatatttttgagagagtaaggccccacacgtac 26008415  T
Q  795 aaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatca 894  Q
    |||| ||| |||| |||||||||| ||| ||||    ||| ||||||||| ||| |||||||||||||||||||||  |||||||||     |||||||     
T  26008414 aaactcgtatgatcagtaggtgcagctcgacagacggtaggaaataaaactccataaactcatcacttaaatagaaaacgtaaaaat-----caatatcg 26008320  T
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| || || || | ||||||  ||||| ||||| |||| ||||    
T  26008319 gaataatgtttgaccattaattaatttcaacaaatgaatagaggggattcaaaaaatcttaaccattgctaacattctacaatcaaaa 26008232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 895 - 1060
Target Start/End: Complemental strand, 17972441 - 17972274
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttc 993  Q
    |||||||| |||||||||||||| || ||||||||||||| |||||| |||||||| ||| ||| ||||||| | | ||||||||||||  ||||| |||    
T  17972441 gaataatgtttgaccattaattagttccaacaaatgaataaaggggattcgaagaatccttaccgccgctaaaactttgcaataaaaaacaggttaattc 17972342  T
Q  994 -taaactctcgctctgg-gcgaatagattaaattgcaaaacccccttttatcttttatttaatttattg 1060  Q
     |||||||| |||||||  | |||||| |||||||||||| ||||||||||||||||||| ||||||||    
T  17972341 ataaactcttgctctggtacaaatagactaaattgcaaaa-ccccttttatcttttattttatttattg 17972274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 468 - 593
Target Start/End: Complemental strand, 26009189 - 26009064
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 567  Q
    ||||||| |||||||||||||| || |||| |||||||||| ||||| |||||||||||| |||| |||||    ||  ||||||||| |||||| ||||    
T  26009189 tataaatgcaactcatctcatttatgatttcgcattcagaacgaaacggttcaagaggaaggcaaacactagatgctttaagggaggagtctctcatcac 26009090  T
Q  568 tctaagtctttagggtatgttttatt 593  Q
    ||||||||| ||||||||||||||||    
T  26009089 tctaagtctctagggtatgttttatt 26009064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 31552618 - 31552507
Alignment:
Q  80 cgttttcagtggggttatcgctatttcgggccttttgtt-tcattgttcccttctttagcccctatcgtatgtcttgtatggtatttggcggtttcaaaa 178  Q
    ||||||| ||||||||| |||||| ||||||||| |||| || ||||||| ||||||||||||||||||| |||||||||||||||||| ||||| || |    
T  31552618 cgttttctgtggggttaccgctatctcgggccttctgttatcgttgttcctttctttagcccctatcgtacgtcttgtatggtatttggtggtttgaata 31552519  T
Q  179 tataagctgttt 190  Q
    || ||| |||||    
T  31552518 taaaagttgttt 31552507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 469 - 592
Target Start/End: Original strand, 24114793 - 24114918
Alignment:
Q  469 ataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctca 566  Q
    ||||||||||||| ||| ||| |||||||  ||||||||| ||| | |||||||||||| |||| ||||| || || | ||||||||   ||||||||||    
T  24114793 ataaatacaactcctcttattaataatttctcattcagaacgaagcggttcaagaggaaggcaaccactaggagcttctagggaggagtttctctcctca 24114892  T
Q  567 ctctaagtctttagggtatgttttat 592  Q
    ||| |||||| |||||||||||||||    
T  24114893 ctccaagtctatagggtatgttttat 24114918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 454 - 593
Target Start/End: Original strand, 26614276 - 26614415
Alignment:
Q  454 gtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggag 553  Q
    ||||||| ||| | |||||||||||||| ||||||||| |||| | ||||||||| | || ||||||||||||| ||| |||||| || ||  |||||||    
T  26614276 gtggaaaacaagcatataaatacaactcctctcattcacaattattcattcagaacg-aagtgttcaagaggaaggcacgcactaggagcttgaagggag 26614374  T
Q  554 ga--atctctcctcactctaagtctttagggtatgttttatt 593  Q
    ||   |||||||||||||| ||||| ||||||||||||||||    
T  26614375 gagtctctctcctcactct-agtctctagggtatgttttatt 26614415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 773 - 920
Target Start/End: Complemental strand, 14006489 - 14006348
Alignment:
Q  773 gagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagt 872  Q
    |||||||||||| ||||||||||||   |||| || | |||||||||  ||||||||  ||| |||||||||||||| || | |||||||| |||||||     
T  14006489 gagagtaaggcctcacacgtacaaatatgtgttattaataggtgcaatccaacagctggtaggaaataaaaccccacgaaattatcacttatatagaaga 14006390  T
Q  873 cgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatt 920  Q
    ||      ||||| ||||||| ||||||||||||| ||||||||||||    
T  14006389 cg------taaaatcaatatccgaataatgcttgatcattaattaatt 14006348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 405 - 591
Target Start/End: Complemental strand, 28318554 - 28318367
Alignment:
Q  405 tttgttacttttaaggggagaaagcccagtttttaaggcctaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattc 504  Q
    |||| |||||||||| ||| ||  | ||||||||||| | ||||||||||||||||||||   |||||||||||||| ||||| |||   ||||  ||||    
T  28318554 tttgctacttttaagtggaaaatactcagtttttaag-cttaaacccaggtggaaatcaagtctataaatacaactcctctcaatcaattttttttattc 28318456  T
Q  505 agaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctcactctaagtctttagggtatgtttta 591  Q
    | ||  || | ||||||||||||   ||| ||||  | || ||||||||||  || |||||||||||||||||| || |||||||||||    
T  28318455 ataacaaagcagttcaagaggaagataagaactagaagcttcaagggaggagtatttctcctcactctaagtctctatggtatgtttta 28318367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 557 - 593
Target Start/End: Complemental strand, 17973208 - 17973172
Alignment:
Q  557 tctctcctcactctaagtctttagggtatgttttatt 593  Q
    |||||||||||||||||||||||||||||||||||||    
T  17973208 tctctcctcactctaagtctttagggtatgttttatt 17973172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 520 - 593
Target Start/End: Complemental strand, 18829642 - 18829567
Alignment:
Q  520 aagaggaatgcaagcactatgaactgcaagggaggaatctc--tcctcactctaagtctttagggtatgttttatt 593  Q
    |||||||| |||||||||| || || |||||||||| ||||  |||||||||||||||| || |||||||||||||    
T  18829642 aagaggaaggcaagcactaggagcttcaagggaggagtctcgctcctcactctaagtctctacggtatgttttatt 18829567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 758 - 870
Target Start/End: Original strand, 24119466 - 24119578
Alignment:
Q  758 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 857  Q
    |||||| |||| |||||||||||| ||||||||||||| ||| ||||||| || ||||||||||  ||||||  ||   | |||||||| |  |||||||    
T  24119466 aacccatacctttgagagagtaagaccccacacgtacatacctgtgtgattagcaggtgcaacttgacagctattaagtagtaaaacccgatgaactcat 24119565  T
Q  858 cacttaaatagaa 870  Q
    |||||| ||||||    
T  24119566 cacttagatagaa 24119578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 711 - 871
Target Start/End: Complemental strand, 17972611 - 17972454
Alignment:
Q  711 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 810  Q
    ||||||||||||||||| ||||| |||| || || |||||  |||| ||||  |||||||||||||||||   |||||| ||| || | |||||||||||    
T  17972611 gtagaaactctggtgtatggttgtaact-ga-agctggaggggaatgaacct-gacctctgagagagtaaaatcccacatgtaaaatctcgtgtgataag 17972515  T
Q  811 taggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaag 871  Q
    |||||||||||  ||||||  ||   | ||||||| ||| ||||||||||||| ||| |||    
T  17972514 taggtgcaacttgacagctggtaagcagtaaaacctcacgaactcatcacttagatataag 17972454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 45264410 - 45264450
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaa 508  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  45264410 tataaatacaactcatctcattcattatttttcattcagaa 45264450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 611 - 807
Target Start/End: Original strand, 45265153 - 45265344
Alignment:
Q  611 tctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgc 710  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||||||| |  | |||||||||| |     | |||||||| || | |||||| ||  ||    
T  45265153 tctttgtttcatttacctctaagatagtaacaaccacacatacatctatgcacaaaggtgcattcc-----aagattgacgtccctgagcattgactcgc 45265247  T
Q  711 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgat 807  Q
     || ||||||   |||||| ||||||||||| |  || ||  ||||||||||| |||||||| ||||||||  | ||||| |||||||  |||||||    
T  45265248 ataaaaactccaatgtaagtttgcaactcgacaactgaaggggaataaacccaaacctctgatagagtaagttcacacacttacaaacatgtgtgat 45265344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 483 - 538
Target Start/End: Complemental strand, 5856269 - 5856214
Alignment:
Q  483 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcacta 538  Q
    ||||||||| |||||| ||||||||| ||| | |||||||||||| ||||||||||    
T  5856269 tctcattcacaatttttcattcagaacgaatcggttcaagaggaaggcaagcacta 5856214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 895 - 982
Target Start/End: Complemental strand, 12269035 - 12268948
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 982  Q
    |||||||| ||||||||||| |||||  ||||||| |||| |||||| | |||||| ||||||  ||||||| ||||| |||| ||||    
T  12269035 gaataatgtttgaccattaactaattctaacaaataaatagaggggatttgaagaatcctaactgccgctaacattctacaatcaaaa 12268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 20268195 - 20268125
Alignment:
Q  195 aaagggagaaattctgttctcaagtcctaatacaatcttatatgaaagaaaacactcaaatgacgaagaaac 266  Q
    |||||||| |||| |||||| |||||| |||||| ||||||||| || ||||||| |||| |||||||||||    
T  20268195 aaagggaggaattttgttcttaagtcccaataca-tcttatatggaataaaacacccaaaggacgaagaaac 20268125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 21054824 - 21054754
Alignment:
Q  195 aaagggagaaattctgttctcaagtcctaatacaatcttatatgaaagaaaacactcaaatgacgaagaaac 266  Q
    |||||||| |||| |||||| |||||| |||||| ||||||||| || ||||||| |||| |||||||||||    
T  21054824 aaagggaggaattttgttcttaagtcccaataca-tcttatatggaataaaacacccaaaggacgaagaaac 21054754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 3e-63; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 592 - 1052
Target Start/End: Complemental strand, 2504737 - 2504296
Alignment:
Q  592 ttatgaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacg 691  Q
    ||||||||||||||||| |||||||||| |||||||| | |||| ||||||| |||||||||||||| ||||||||||||||  || ||||||||||| |    
T  2504737 ttatgaaccctaatttaagtctttgttttaattacctttgagagggtaagaatcccacatacatctatgtgcgaaggtgcatc-ccgtataggattgatg 2504639  T
Q  692 accttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacg 791  Q
    | | |||||||| ||  | ||| ||||||   |||||| || |||||||| || || |  |||||||||||||||||||||||| ||||| || ||||||    
T  2504638 atcctaagcattgactcgtgtaaaaactccaatgtaag-ttacaactcgacagctgaatgagaataaacccagacctctgagagcgtaagacctcacacg 2504540  T
Q  792 tacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaata 891  Q
    |||||| | |||||||||||||||| ||||| | |||   ||| ||||||||||||| |||||| ||||||||||||||| ||      |||||| ||||    
T  2504539 tacaaatctgtgtgataagtaggtgtaactcgatagcaggtaggaaataaaaccccaaaaactcttcacttaaatagaagacg------taaaacaaata 2504446  T
Q  892 tcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttact 991  Q
    |  |||||||||||||||||||||||||| |||||| |||||| || |||           |||||| || || | |||||||||| |||   |||||||    
T  2504445 tatgaataatgcttgaccattaattaattccaacaagtgaatagagagga-----------ctaaccgcctctgacattctgcaatcaaaccaggttact 2504357  T
Q  992 tctaaactctcgctctgggcgaatagattaaattgcaaaacccccttttatcttttattta 1052  Q
     |||||||||  ||||  || || | ||||||||||||||||||| |||||||||||||||    
T  2504356 cctaaactctttctctccgcaaacaaattaaattgcaaaacccccctttatcttttattta 2504296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 405 - 593
Target Start/End: Complemental strand, 2505429 - 2505242
Alignment:
Q  405 tttgttacttttaaggggagaaagcccagtttttaaggcctaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattc 504  Q
    |||| |||||||||| |||||||||||| ||||||   || ||||||||||||||||||  | ||| | |||| ||| ||||||||||| |||| |||||    
T  2505429 tttgctacttttaagtggagaaagcccaatttttattccc-aaacccaggtggaaatcattcctatgagtacagctcctctcattcatagtttttcattc 2505331  T
Q  505 agaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttatt 593  Q
    ||||  || | |||||| ||||| |||| |||||||| || || ||||||| |||||||||||||||| ||| || |||||||||||||    
T  2505330 agaacaaagcagttcaaaaggaaggcaaacactatgagcttcatgggaggagtctctcctcactctaactctctatggtatgttttatt 2505242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 468 - 593
Target Start/End: Complemental strand, 23008144 - 23008019
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 567  Q
    |||||||||||||  ||||||| |||||||| |||||| || ||||| |||||||| ||| || ||||||| || || ||||||| || |||||| ||||    
T  23008144 tataaatacaacttctctcatttataatttttcattcaaaacgaaacggttcaagaagaaggcgagcactaggagcttcaagggatgagtctctcgtcac 23008045  T
Q  568 tctaagtctttagggtatgttttatt 593  Q
    ||||||||| ||||||||||||||||    
T  23008044 tctaagtctctagggtatgttttatt 23008019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 763 - 934
Target Start/End: Original strand, 4258600 - 4258765
Alignment:
Q  763 agacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactt 862  Q
    ||||||| ||||||||||||| |||||  |||||||  ||||||| |||||||  ||||| || ||| |||| |||||||||||||  ||||||||||||    
T  4258600 agacctccgagagagtaaggctccacaaatacaaacttgtgtgatcagtaggtttaactctactgctgataggaaataaaaccccatgaactcatcactt 4258699  T
Q  863 aaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 934  Q
    ||| | ||| ||      ||||||||||||  |||||||||||| ||||||| |||||  ||||||||||||    
T  4258700 aaacataagacg------taaaaccaatatttgaataatgcttgtccattaactaattcaaacaaatgaata 4258765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 677 - 863
Target Start/End: Complemental strand, 2454225 - 2454041
Alignment:
Q  677 cctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagaga 776  Q
    |||| ||||||||||||| ||| || | | | | ||||||||||  |||||||||||||||| || ||||  || ||||| |||| |||||||| |||||    
T  2454225 cctacaggattgacgaccctaatcactgaaccgtgtagaaactccagtgtaaggttgcaact-gacagttaaaggagaatgaacc-agacctcttagaga 2454128  T
Q  777 gtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 863  Q
    ||||||  ||| || |||||||||||||||| |||||||| ||||  | || | ||||  | |||||||||||||||||||||||||    
T  2454127 gtaaggttccagacatacaaacccgtgtgatcagtaggtgaaacttcatagttgataggtagtaaaaccccacaaactcatcactta 2454041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 467 - 593
Target Start/End: Original strand, 26133756 - 26133884
Alignment:
Q  467 ttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcct 564  Q
    ||||||||||||||  ||| |||||||||||| |||||||||  || | ||||||||| || |||||||||||||  | ||||||||||   ||||||||    
T  26133756 ttataaatacaacttctcttattcataatttttcattcagaacaaagcagttcaagagaaaggcaagcactatgagtttcaagggaggagtctctctcct 26133855  T
Q  565 cactctaagtctttagggtatgttttatt 593  Q
    |||| |||| || ||||||||||||||||    
T  26133856 cactttaagactctagggtatgttttatt 26133884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 896 - 1084
Target Start/End: Complemental strand, 2953847 - 2953660
Alignment:
Q  896 aataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttcta 995  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||| | ||| || ||||||  |||||||||||||||||| ||||   |||| ||| |    
T  2953847 aataatgtttgaccattaattaattccaacaaatg-atataggggatttgaa-aatcctaacggccgctaatattctgcaatcaaaacatgttatttcga 2953750  T
Q  996 aactctcgctctgggcgaatagattaaattg--caaaacccccttttatcttttatttaatttattgtttattgttcccaaataagtaacg 1084  Q
    ||||||  ||||   | || |||| ||| ||  |||| ||||| |||||||||||||| ||||||||||| ||||||  ||||||||||||    
T  2953749 aactctaactctaatcaaacagatcaaaatgtacaaaccccccctttatcttttattt-atttattgttttttgttcttaaataagtaacg 2953660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 688 - 820
Target Start/End: Original strand, 15303243 - 15303375
Alignment:
Q  688 gacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggcccca 787  Q
    ||||||| ||| || ||||||| |||||||||| |||||||||||||||||||| || | |||  ||||||||| | |||| | |||||||||| ||| |    
T  15303243 gacgaccctaaacactaacctgtgtagaaactccggtgtaaggttgcaactcgacagctagaggggaataaacctatacctgtaagagagtaagacccga 15303342  T
Q  788 cacgtacaaacccgtgtgataagtaggtgcaac 820  Q
     ||||||||||  ||||||| | || |||||||    
T  15303343 aacgtacaaacttgtgtgatcattaagtgcaac 15303375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 922 - 1054
Target Start/End: Complemental strand, 21227428 - 21227293
Alignment:
Q  922 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactctcgctctgggcgaatagatt 1020  Q
    |||||||| |||| |||||| |||||||| ||||||||| ||||||||| ||||||||||||   |||||||||||||||| |||||  || || || |     
T  21227428 caacaaataaatagaggggattcgaagaatcctaaccactgctaatattttgcaataaaaaacatgttacttctaaactcttgctctaagcaaacaggtc 21227329  T
Q  1021 aaattgca-aaac-ccccttttatcttttatttaat 1054  Q
    |||||||| |||| | || |||||||||||||||||    
T  21227328 aaattgcacaaactctccatttatcttttatttaat 21227293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 618 - 728
Target Start/End: Original strand, 26134370 - 26134480
Alignment:
Q  618 ttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaa 717  Q
    ||||||||||||| ||||| ||| || | ||| || |||| ||| |||||||||||  ||||||| |||||||||||  |||||||||| ||| ||||||    
T  26134370 ttcaattacctctgagagaataacaaacacacgtatatctgcgtacgaaggtgcatccccctatatgattgacgacccaaagcattaacgtgcatagaaa 26134469  T
Q  718 ctctggtgtaa 728  Q
    |||| ||||||    
T  26134470 ctcttgtgtaa 26134480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 916 - 1008
Target Start/End: Original strand, 19398665 - 19398758
Alignment:
Q  916 taatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctg 1008  Q
    ||||| ||||||||  ||| ||| || || ||||| ||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  19398665 taattccaacaaatagatagaggagattcaaagaatcctaaccaccgctaatattgtgctataaaaaataggttactactaaactctcgctctg 19398758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 516 - 593
Target Start/End: Original strand, 24751838 - 24751915
Alignment:
Q  516 gttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttatt 593  Q
    |||| ||||||| |||||||||  |||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  24751838 gttcgagaggaaggcaagcacttagaactttaagggaggagtctctcctcactctatgtctctagggtatgttttatt 24751915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 405 - 505
Target Start/End: Complemental strand, 2502609 - 2502510
Alignment:
Q  405 tttgttacttttaaggggagaaagcccagtttttaaggcctaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattc 504  Q
    |||| |||||||||| |||||||||||| |||||||  || | ||||||||||||||||  | ||||| |||||||| ||||||||||| |||| |||||    
T  2502609 tttgctacttttaagtggagaaagcccaatttttaatccc-agacccaggtggaaatcactcctataagtacaactcctctcattcatagtttttcattc 2502511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 468 - 593
Target Start/End: Original strand, 10414629 - 10414756
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctc 565  Q
    ||||||||| |||| |||||||||||||||| |||||| || ||||| ||||||||||||  |||| |||| || ||   ||| ||||   |||||||||    
T  10414629 tataaataccactcctctcattcataatttttcattcataacgaaacggttcaagaggaagacaagtactaggagctttgaggaaggagtctctctcctc 10414728  T
Q  566 actctaagtctttagggtatgttttatt 593  Q
    |||||| |||||| |||| |||||||||    
T  10414729 actctatgtcttttgggtgtgttttatt 10414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 910 - 1048
Target Start/End: Complemental strand, 9890435 - 9890296
Alignment:
Q  910 attaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctg- 1008  Q
    ||||||||||| |||||||| |||| |||||| | |||||| | ||||| ||||||| |||||||||| ||||  ||||  ||||||||||| ||||||     
T  9890435 attaattaattccaacaaattaatagaggggatttgaagaatcttaaccgccgctaagattctgcaatcaaaacaggttgtttctaaactcttgctctgc 9890336  T
Q  1009 ggcgaatagattaaattgcaaaacccccttttatctttta 1048  Q
      | || | | ||||||||||||||| | |||||||||||    
T  9890335 tacaaacaaactaaattgcaaaaccctcctttatctttta 9890296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 468 - 591
Target Start/End: Complemental strand, 8158522 - 8158397
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctc 565  Q
    |||||||||| ||| |||||||||||||||| |||||| ||||||   |||||||||||| |||| ||||| || || |||||||| | ||  ||||  |    
T  8158522 tataaatacatctcctctcattcataatttttcattcataatgaagtggttcaagaggaaggcaaacactaggagcttcaagggagaagtctttctctac 8158423  T
Q  566 actctaagtctttagggtatgtttta 591  Q
    ||| ||| ||| ||||||||||||||    
T  8158422 actttaaatctctagggtatgtttta 8158397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 732 - 869
Target Start/End: Complemental strand, 18466424 - 18466287
Alignment:
Q  732 tgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctca 831  Q
    |||||||||| ||||||||  |||||| |||| | |||||| |||||||||||| ||||||||  ||| | ||||| ||  |||||||||| | | || |    
T  18466424 tgcaactcgacagttggaggggaataagcccatatctctgacagagtaaggcccgacacgtacctacctgggtgatcagcgggtgcaactcgataactga 18466325  T
Q  832 tagaaaataaaaccccacaaactcatcacttaaataga 869  Q
    |||  | ||||||||||| | ||||||||||| |||||    
T  18466324 taggtagtaaaaccccacgatctcatcacttatataga 18466287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 21884872 - 21884973
Alignment:
Q  767 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 866  Q
    ||||||||||||||| |||||| |||||| ||| ||||||| || ||||||||||  |||||| ||||  | |||||||||  |||||| |||||| |||    
T  21884872 ctctgagagagtaagaccccacgcgtacatacctgtgtgatcagcaggtgcaactagacagctgataggcagtaaaaccccgtaaactcgtcacttgaat 21884971  T
Q  867 ag 868  Q
    ||    
T  21884972 ag 21884973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 716 - 868
Target Start/End: Original strand, 21912145 - 21912297
Alignment:
Q  716 aactctggtgtaa-ggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtagg 814  Q
    ||||| ||||||| |||||||||| || || |||||  |||| |||||| | |||||||| |||||| ||||||||||||| ||||||||||| |  | |    
T  21912145 aactccggtgtaatggttgcaact-gacagatggaggggaatgaacccatatctctgagaaagtaagaccccacacgtacatacccgtgtgatcaacatg 21912243  T
Q  815 tgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatag 868  Q
    |||||||||||| || ||||  | |||| ||||   |||||||||||| |||||    
T  21912244 tgcaactcaacatctgataggtagtaaagccccgtgaactcatcacttgaatag 21912297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 792 - 934
Target Start/End: Original strand, 8937976 - 8938113
Alignment:
Q  792 tacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaat 890  Q
    ||||||| |||||||| |||||||||||||| ||||||  || || ||||||||||||| ||||||||||||  || | ||      | ||  |||||||    
T  8937976 tacaaactcgtgtgatcagtaggtgcaactcgacagctggtaggataataaaaccccacgaactcatcacttttatgggag------acatttaaccaat 8938069  T
Q  891 atcagaataatgcttgaccattaattaatttcaacaaatgaata 934  Q
      | ||||||| |||||||||||||||||| |||||||||||||    
T  8938070 ccctgaataatacttgaccattaattaattccaacaaatgaata 8938113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 922 - 1001
Target Start/End: Complemental strand, 23587870 - 23587790
Alignment:
Q  922 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactct 1001  Q
    |||||||| |||| |||||  ||||||||  |||||||||||||| ||||||||||||||||  ||||||| |||||||||    
T  23587870 caacaaataaatagaggggtttcgaagaattctaaccaccgctaacattctgcaataaaaaacaggttactcctaaactct 23587790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 897 - 983
Target Start/End: Complemental strand, 9063067 - 9062981
Alignment:
Q  897 ataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 983  Q
    |||||| ||||||| ||||||| | ||||||||||||| || ||| || |||||  |||||| ||||||| |||||||||| |||||    
T  9063067 ataatgtttgaccaataattaagtccaacaaatgaatagagaggattctaagaattctaaccgccgctaacattctgcaatcaaaaa 9062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 484 - 562
Target Start/End: Original strand, 9863310 - 9863388
Alignment:
Q  484 ctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc 562  Q
    ||||||||||||||  |||||| |||||| | |||| ||||||| ||||||||||||| || ||| |||||| ||||||    
T  9863310 ctcattcataatttctcattcataatgaagcggttcgagaggaaggcaagcactatgagcttcaaaggaggagtctctc 9863388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 770 - 863
Target Start/End: Complemental strand, 9916906 - 9916813
Alignment:
Q  770 tgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 863  Q
    ||||||| ||||||||||||| |||  ||||||||||| || | || |||||| |||||| ||||  | ||||||||||  |||||||||||||    
T  9916906 tgagagaataaggccccacacatacctacccgtgtgattagcatgtacaactcgacagctaataggtagtaaaaccccaataactcatcactta 9916813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 770 - 863
Target Start/End: Complemental strand, 9924818 - 9924725
Alignment:
Q  770 tgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 863  Q
    ||||||| ||||||||||||| |||  ||||||||||| || | || |||||| |||||| ||||  | ||||||||||  |||||||||||||    
T  9924818 tgagagaataaggccccacacatacctacccgtgtgattagcatgtacaactcgacagctaataggtagtaaaaccccaataactcatcactta 9924725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 895 - 966
Target Start/End: Complemental strand, 2454021 - 2453950
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaa 966  Q
    |||||||||||||||| | ||||| | ||||||||||||| |||||  ||||| || ||||||| |||||||    
T  2454021 gaataatgcttgaccaatcattaaatccaacaaatgaataaagggggttcgaataatcctaaccgccgctaa 2453950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 770 - 868
Target Start/End: Complemental strand, 13707865 - 13707766
Alignment:
Q  770 tgagagagtaaggccccacacgtacaaaccc-gtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatag 868  Q
    |||||||||||||||||||| ||||  |||| ||||||| |  | ||||||||  |||||| ||||  | ||||||||||| ||||||||||||| ||||    
T  13707865 tgagagagtaaggccccacatgtacctaccccgtgtgatcaacatgtgcaacttgacagctgataggtagtaaaaccccacgaactcatcacttagatag 13707766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 911 - 966
Target Start/End: Original strand, 16223989 - 16224044
Alignment:
Q  911 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaa 966  Q
    |||||||||| ||||||||||||| |||||| || ||||| |||||||| ||||||    
T  16223989 ttaattaattccaacaaatgaatagaggggattcaaagaatcctaaccatcgctaa 16224044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 596 - 642
Target Start/End: Original strand, 10480376 - 10480422
Alignment:
Q  596 gaaccctaatttacgtctttgtttcaattacctctaagagagtaaga 642  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||    
T  10480376 gaaccctaatttaagtccacgtttcaattacctctaagagagtaaga 10480422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 915 - 1028
Target Start/End: Original strand, 21102126 - 21102240
Alignment:
Q  915 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactctcgctctgggcga 1013  Q
    |||||| ||||||||  | | |||||| |||||||| |||| |||||||||| ||| ||||||||||||  ||||||  |||||||||| ||||  || |    
T  21102126 ttaattccaacaaatagaaagaggggattcgaagaatcctatccaccgctaacattttgcaataaaaaacaggttacccctaaactctcactctaagcaa 21102225  T
Q  1014 atagattaaattgca 1028  Q
    | |||| ||||||||    
T  21102226 acagatcaaattgca 21102240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 486 - 588
Target Start/End: Original strand, 4900934 - 4901038
Alignment:
Q  486 cattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaat--ctctcctcactctaagtctttagggt 583  Q
    |||||||||||   ||||||||| ||| | ||||||||| || |||||||||| || || ||| |||||  |  |||||||||||| |||||| ||||||    
T  4900934 cattcataattcctcattcagaacgaagcggttcaagagaaaggcaagcactaggagcttcaaaggaggtgtttctctcctcactccaagtctctagggt 4901033  T
Q  584 atgtt 588  Q
    |||||    
T  4901034 atgtt 4901038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 1e-56; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 596 - 915
Target Start/End: Complemental strand, 28279010 - 28278699
Alignment:
Q  596 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacct 695  Q
    ||||||||||||| ||| ||||||||| |||| || |||||||||||||| ||  ||| ||||   |||||||||||| |||||| | |||||| ||||     
T  28279010 gaaccctaatttaagtcattgtttcaaataccactgagagagtaagaacctcatgtacctctatc-gcgaaggtgcatctccctacatgattgatgaccc 28278912  T
Q  696 taagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtaca 795  Q
    |||||||||||    ||||||||||||||| ||||||||||||||| | || | |  ||||||||| | |||| ||||||||||||| ||||||||||||    
T  28278911 taagcattaacacatgtagaaactctggtgcaaggttgcaactcgacaattagtggggaataaaccaa-acctatgagagagtaaggtcccacacgtaca 28278813  T
Q  796 aacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcag 895  Q
    ||| ||||| || |||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||      |  ||||| ||||||| |    
T  28278812 aactcgtgttatcagtaggtgcaactcgacaactgatagaaaataaaagcccacaaactcatcacttaaatagaag------atgtaaaatcaatatctg 28278719  T
Q  896 aataatgcttgaccattaat 915  Q
    ||||||| ||||||||||||    
T  28278718 aataatgtttgaccattaat 28278699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 651 - 1034
Target Start/End: Original strand, 25922438 - 25922819
Alignment:
Q  651 tacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggag 750  Q
    ||||||||||||| | || ||||  ||||||| ||||||||||| ||||||| |||| | ||||||||||| |||||||| ||||||||||||| |||||    
T  25922438 tacatctacgtgctagggagcatccccctataagattgacgaccctaagcatgaacccgtgtagaaactctagtgtaaggatgcaactcgatagctggag 25922537  T
Q  751 cagaataaacc--cagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaacccc 847  Q
      || |||| |    ||||| ||||||||||||||| |||||   ||||||  || ||| |||||||||||||  |||||   || ||||||||||| ||    
T  25922538 gggagtaaaacatatgacctatgagagagtaaggcctcacacacgcaaaccaatgcgatcagtaggtgcaacttgacagcatgtaggaaaataaaactcc 25922637  T
Q  848 acaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaa 947  Q
    ||||||||||||||||||||||      | | ||  |||||||||| |||||||| ||||||||||||||||| | ||||||||||| | | || || ||    
T  25922638 acaaactcatcacttaaataga------atacatttaaccaatatctgaataatgtttgaccattaattaattccgacaaatgaataaatgagattctaa 25922731  T
Q  948 gaaccctaaccaccgctaatattctgcaat-aaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgcaaaaccc 1034  Q
     || | ||||  ||||||| ||| |||||| | |||   |||||| ||||||||| |||||| || ||||||| |||||||| |||||    
T  25922732 aaatcttaacagccgctaacattttgcaatcataaacatgttactcctaaactcttgctctgagcaaatagatcaaattgcacaaccc 25922819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 614 - 818
Target Start/End: Original strand, 23379807 - 23380011
Alignment:
Q  614 ttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgta 713  Q
    ||||||||||||||| | |||||||||||||||||| ||| |||||| || ||||||||| |||||| | |||||| |||| || |||| || ||| | |    
T  23379807 ttgtttcaattacctatgagagagtaagaaccccacgtacctctacgcgcaaaggtgcatctccctacatgattgaagaccctatgcatgaaactgtgga 23379906  T
Q  714 gaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtag 813  Q
    ||||||||| ||||| |||||||||||| |  |||||  |||| |||   |||| || ||| |||||| ||||||| |||||||| ||| ||||||||||    
T  23379907 gaaactctgttgtaatgttgcaactcgacacctggaggggaattaactatgaccactaagaaagtaagaccccacatgtacaaactcgtatgataagtag 23380006  T
Q  814 gtgca 818  Q
    |||||    
T  23380007 gtgca 23380011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 466 - 574
Target Start/End: Original strand, 25934012 - 25934122
Alignment:
Q  466 cttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcc 563  Q
    |||||||||||| ||| | ||||||||| |||  ||||||||||||||| |||||||||||| || |||||||||||||  ||||||||| ||  |||||    
T  25934012 cttataaatacatctcctatcattcatattttctcattcagaatgaaacggttcaagaggaaggctagcactatgaactttaagggaggagtctttctcc 25934111  T
Q  564 tcactctaagt 574  Q
    |||||||||||    
T  25934112 tcactctaagt 25934122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 483 - 593
Target Start/End: Original strand, 20533070 - 20533180
Alignment:
Q  483 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttaggg 582  Q
    |||||||||| ||||  ||||||||||||| | ||||||||||||  ||||||| |||| || || ||||||| |||||||||||||||||||| ||||     
T  20533070 tctcattcattatttctcattcagaatgaagcggttcaagaggaagacaagcaccatgagcttcaggggaggagtctctcctcactctaagtctctagga 20533169  T
Q  583 tatgttttatt 593  Q
    ||| |||||||    
T  20533170 tatattttatt 20533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 915 - 1028
Target Start/End: Original strand, 32417200 - 32417314
Alignment:
Q  915 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctgggcga 1013  Q
    |||||| |||||| | |||| |||||| |||||||| |||||||||| |||| |||||| |||||||||| |||||||||||||||| |||||| ||| |    
T  32417200 ttaattccaacaagtaaatagaggggattcgaagaatcctaaccaccactaacattctgaaataaaaaataggttacttctaaactcacgctctaggcaa 32417299  T
Q  1014 atagattaaattgca 1028  Q
    | |||| ||| ||||    
T  32417300 aaagataaaactgca 32417314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 632 - 750
Target Start/End: Original strand, 27921055 - 27921174
Alignment:
Q  632 agagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaa-gg 730  Q
    ||||||||||||||||||||| ||||||||  |||||||| | ||||||||  |||||||||| || ||||| ||  || ||||||||  |||||||  |    
T  27921055 agagagtaagaaccccacataaatctacgtatgaaggtgcgtctccctatataattgacgaccctatgcattgacgcgcatagaaacttcggtgtaatag 27921154  T
Q  731 ttgcaactcgatagttggag 750  Q
    ||||||||||| ||||||||    
T  27921155 ttgcaactcgacagttggag 27921174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 754 - 863
Target Start/End: Original strand, 20533745 - 20533854
Alignment:
Q  754 aataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaac 853  Q
    |||||||| | ||||| ||||||||||||||||||||||| |||| | ||||||  ||||||||||||||||| ||   ||  ||||||||| |||| |     
T  20533745 aataaaccaaaacctccgagagagtaaggccccacacgtataaactcatgtgatttgtaggtgcaactcaacaactgtaaggtaataaaacctcacatag 20533844  T
Q  854 tcatcactta 863  Q
    ||||||||||    
T  20533845 tcatcactta 20533854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 468 - 573
Target Start/End: Complemental strand, 28279825 - 28279720
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 567  Q
    |||||||||||| | ||||||||||  || ||||||||||| ||| | ||| |||||||| |||| ||||| || ||  ||||||||| |||||||||||    
T  28279825 tataaatacaacccttctcattcattcttatgcattcagaacgaagcggtttaagaggaaggcaaacactaggagctttaagggaggactctctcctcac 28279726  T
Q  568 tctaag 573  Q
    ||||||    
T  28279725 tctaag 28279720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 446 - 593
Target Start/End: Original strand, 17336804 - 17336949
Alignment:
Q  446 aaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactg 545  Q
    ||||||| ||||||| ||| | ||| |||||||||| |||||| ||||||||| |||||| ||  |||| ||| ||||||||  ||||||||| || ||     
T  17336804 aaacccaagtggaaaccaagcctattaatacaactcttctcat-cataatttttcattcacaaa-aaacggtttaagaggaagtcaagcactaggagctt 17336901  T
Q  546 caagggaggaatctctcctcactctaagtctttagggtatgttttatt 593  Q
    |||| ||||| ||| |||||||||||||  | ||||| ||||||||||    
T  17336902 caagagaggagtctatcctcactctaagcttctagggcatgttttatt 17336949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 814 - 869
Target Start/End: Complemental strand, 18223354 - 18223299
Alignment:
Q  814 gtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaataga 869  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||||||||||||    
T  18223354 gtgcaactcaacagctaataggtagtaaaaccccacaaactcatcacttaaataga 18223299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 767 - 868
Target Start/End: Complemental strand, 15544434 - 15544332
Alignment:
Q  767 ctctgagagagtaaggcccc-acacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaa 865  Q
    ||||||||||||||| |||| ||||||||  ||||||||||| |||||||||| ||| ||| ||  |||  | ||||||||||| |||| ||||||||||    
T  15544434 ctctgagagagtaagacccccacacgtacctacccgtgtgatcagtaggtgcagctcgacaactgctaggtagtaaaaccccacgaacttatcacttaaa 15544335  T
Q  866 tag 868  Q
    |||    
T  15544334 tag 15544332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 470 - 593
Target Start/End: Complemental strand, 17831225 - 17831100
Alignment:
Q  470 taaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctcac 567  Q
    ||||||| |||| |||||||||||||||  |||| |||| ||| | ||| ||||||||||||||||||| || ||  || |||||| ||  | | |||||    
T  17831225 taaataccactcctctcattcataatttctcatttagaacgaatcggtttaagaggaatgcaagcactaagagctctaatggaggagtcttttttctcac 17831126  T
Q  568 tctaagtctttagggtatgttttatt 593  Q
    ||||| ||| ||||||||||||||||    
T  17831125 tctaaatctctagggtatgttttatt 17831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 1008
Target Start/End: Original strand, 27921254 - 27921341
Alignment:
Q  922 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctg 1008  Q
    |||||||| |||| |||||| |||||||| ||||||| | ||||| |||||||||| ||||   ||||||||||||||||||| ||||    
T  27921254 caacaaataaataaaggggattcgaagaatcctaacctctgctaacattctgcaatcaaaaccaggttacttctaaactctcgttctg 27921341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1028 - 1081
Target Start/End: Original strand, 23380213 - 23380266
Alignment:
Q  1028 aaaacccccttttatcttttatttaattt-attgtttattgttcccaaataagta 1081  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  23380213 aaaacccccttt-atcttttattttattttattgtttattgttcccaaataagta 23380266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 764 - 821
Target Start/End: Original strand, 17337558 - 17337615
Alignment:
Q  764 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 821  Q
    ||||||||||||||| | ||||||||||||||||| ||||| || ||||| |||||||    
T  17337558 gacctctgagagagtcaagccccacacgtacaaactcgtgtcatcagtagatgcaact 17337615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 483 - 593
Target Start/End: Complemental strand, 26252997 - 26252883
Alignment:
Q  483 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaat--ctctcctcactctaagtctt--t 578  Q
    |||||||||||||||  ||||||||||||| | |||||||||||| |||||| ||| || || ||||| || | |  |||||||||||| || | ||  |    
T  26252997 tctcattcataatttctcattcagaatgaagcagttcaagaggaaggcaagcgctaggagcttcaaggaagtagttcctctcctcactccaaatttttct 26252898  T
Q  579 agggtatgttttatt 593  Q
    |||||||||||||||    
T  26252897 agggtatgttttatt 26252883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 765 - 821
Target Start/End: Complemental strand, 28253675 - 28253619
Alignment:
Q  765 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 821  Q
    |||| |||||||||||| ||||||| ||||| ||||||||||| || ||||||||||    
T  28253675 acctttgagagagtaagaccccacatgtacatacccgtgtgatcagcaggtgcaact 28253619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 611 - 642
Target Start/End: Original strand, 15492504 - 15492535
Alignment:
Q  611 tctttgtttcaattacctctaagagagtaaga 642  Q
    ||||||||||||||||||||||||||||||||    
T  15492504 tctttgtttcaattacctctaagagagtaaga 15492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 711 - 821
Target Start/End: Original strand, 112286 - 112395
Alignment:
Q  711 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 810  Q
    ||||||||||||||| ||||||||||| ||| || |||||   ||| |||||| ||| | ||||| ||||| ||||||| ||||  ||||||||||| ||    
T  112286 gtagaaactctggtggaaggttgcaac-cgacagctggagggaaatgaacccataccaccgagagggtaagaccccacatgtacgtacccgtgtgatcag 112384  T
Q  811 taggtgcaact 821  Q
     ||||| ||||    
T  112385 caggtgtaact 112395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 922 - 992
Target Start/End: Complemental strand, 15470177 - 15470107
Alignment:
Q  922 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttactt 992  Q
    |||||||| |||| |||||| || ||||| ||||||| ||||||||||| |||||| |||| |||| ||||    
T  15470177 caacaaataaatagaggggattcaaagaatcctaaccgccgctaatattttgcaatcaaaattggtaactt 15470107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 500 - 562
Target Start/End: Original strand, 19762195 - 19762257
Alignment:
Q  500 cattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc 562  Q
    ||||||||| ||| | |||||||||||| |||||||||| || || |||||||||| ||||||    
T  19762195 cattcagaacgaagcagttcaagaggaaggcaagcactaggagcttcaagggaggagtctctc 19762257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 17336619 - 17336676
Alignment:
Q  229 atcttatatgaaagaaaacactcaaatgacgaagaaacatgtgattacgcgcgagaaa 286  Q
    ||||||||||||||||||||| ||||  |||||| |||| | |||||||||| |||||    
T  17336619 atcttatatgaaagaaaacacccaaagaacgaagcaacaggcgattacgcgcaagaaa 17336676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 3e-51; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 753 - 1079
Target Start/End: Original strand, 27542602 - 27542921
Alignment:
Q  753 gaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaa 852  Q
    ||||||| ||| || ||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||| || | ||  | | ||||||||| | |||||    
T  27542602 gaataaaaccatacatctgagagattaaggccccacacatacaaacctgtgtgattagtaggtgcaactaaagaactggttggaaataaaactctacaaa 27542701  T
Q  853 ctcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaacc 952  Q
    ||||||||||||||||||| |      |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| | |||| ||||||||      
T  27542702 ctcatcacttaaatagaagac------ataaaaccaatatctgaataatgtttgaccattaattaattccaacaaatgaatagatgggattcgaagaatt 27542795  T
Q  953 ctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgc---aaaacccccttttatcttttat 1049  Q
    |||||||||| |||  ||||| ||| ||||  ||||||||||||||||| |||||| || || |||| || ||||   ||  ||||| ||||||||||||    
T  27542796 ctaaccaccgttaactttctgtaatcaaaacaggttacttctaaactcttgctctgagcaaacagatcaatttgcacgaactcccccctttatcttttat 27542895  T
Q  1050 ttaatttattgtttattgttcccaaataag 1079  Q
        ||||||||||  ||||||||||||||    
T  27542896 ----tttattgttttatgttcccaaataag 27542921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 466 - 593
Target Start/End: Original strand, 18473555 - 18473682
Alignment:
Q  466 cttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctc 565  Q
    ||||||||||| |||  ||| |||||||||||| |||||| || |||   |||||||||||| ||||||||||||| || |||||||||| ||||||||     
T  18473555 cttataaataccacttctctaattcataatttttcattcataacgaagaggttcaagaggaaggcaagcactatgagcttcaagggaggattctctcctg 18473654  T
Q  566 actctaagtctttagggtatgttttatt 593  Q
    ||||||||||| ||||||||||||||||    
T  18473655 actctaagtctctagggtatgttttatt 18473682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 615 - 750
Target Start/End: Complemental strand, 29756076 - 29755941
Alignment:
Q  615 tgtttcaattacctctaagagagtaagaaccccacatacatctacgtg-cgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgta 713  Q
    |||||||||||| | | |||||||||||||| |||||||||||||||| |||||||||||  ||||||| ||||||||||||| |||||| ||  |  ||    
T  29756076 tgtttcaattacatttgagagagtaagaacctcacatacatctacgtgtcgaaggtgcatccccctataagattgacgaccttgagcattgactggtata 29755977  T
Q  714 gaaactctggtgtaaggttgcaactcgatagttggag 750  Q
    ||| || ||||||||||||||||||||| ||||||||    
T  29755976 gaagctttggtgtaaggttgcaactcga-agttggag 29755941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 621 - 738
Target Start/End: Original strand, 20339446 - 20339563
Alignment:
Q  621 aattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactc 720  Q
    ||||| |||| ||| ||||||| || ||| ||||| || |||||||||||||| ||| ||||||||||| |||| ||| |||| ||  ||||||||||||    
T  20339446 aattaactctgagatagtaagagcctcacgtacatttatgtgcgaaggtgcatctccatataggattgatgaccctaaacattgactcgcgtagaaactc 20339545  T
Q  721 tggtgtaaggttgcaact 738  Q
     |||||||| ||||||||    
T  20339546 cggtgtaagtttgcaact 20339563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 895 - 1051
Target Start/End: Complemental strand, 25756939 - 25756784
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttct 994  Q
    |||||||| ||||||||||||||||| |||||||| |||| || ||| |||||| | ||||||||||||||| ||| |||||| ||||  || |||| ||    
T  25756939 gaataatgtttgaccattaattaattccaacaaataaatagagaggattcgaag-atcctaaccaccgctaacattttgcaatcaaaacaggctactcct 25756841  T
Q  995 aaactctcgctctgggcgaatagattaaattgcaaaacccccttttatcttttattt 1051  Q
    ||||||| | ||      ||  || ||||||||||||||||| ||||||||||||||    
T  25756840 aaactcttgatcgactgcaaacgactaaattgcaaaacccccctttatcttttattt 25756784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 516 - 592
Target Start/End: Original strand, 21018959 - 21019037
Alignment:
Q  516 gttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc--ctcactctaagtctttagggtatgttttat 592  Q
    |||||||||||| ||||||| || || || ||||||| |||||||||  |||||||||||||| |||||||||||||||    
T  21018959 gttcaagaggaaggcaagcattaggagcttcaagggaagaatctctctactcactctaagtctctagggtatgttttat 21019037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 468 - 593
Target Start/End: Original strand, 51119050 - 51119175
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 567  Q
    ||||||| |||||||||||||| | |||| | |||||| ||||||   ||||||||| || |||| ||| | ||||| |||||||| | ||||||  | |    
T  51119050 tataaattcaactcatctcattaacaattattcattcataatgaagtggttcaagagaaaggcaaacaccaggaacttcaagggagtagtctctctcctc 51119149  T
Q  568 tctaagtctttagggtatgttttatt 593  Q
     |||||||| ||||||||||||||||    
T  51119150 actaagtctctagggtatgttttatt 51119175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 915 - 1008
Target Start/End: Complemental strand, 21083519 - 21083425
Alignment:
Q  915 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctg 1008  Q
    |||||||||||||||||||| |||  | ||||||||  |||||| ||  |||  ||||||||||||||   ||||||||||||||||||||||||    
T  21083519 ttaatttcaacaaatgaatagaggatattcgaagaattctaaccgcctgtaacgttctgcaataaaaatcaggttacttctaaactctcgctctg 21083425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 934
Target Start/End: Original strand, 20339619 - 20339669
Alignment:
Q  884 aaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 934  Q
    |||||||| |||||||||||||||  |||| |||||| |||||||||||||    
T  20339619 aaccaataccagaataatgcttgattattatttaattccaacaaatgaata 20339669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 601 - 642
Target Start/End: Complemental strand, 25757217 - 25757176
Alignment:
Q  601 ctaatttacgtctttgtttcaattacctctaagagagtaaga 642  Q
    |||||||| |||| |||||||||||||||| |||||||||||    
T  25757217 ctaatttaagtctatgtttcaattacctctgagagagtaaga 25757176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 9e-33; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 591 - 759
Target Start/End: Original strand, 26214999 - 26215167
Alignment:
Q  591 attatgaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgac 690  Q
    |||| |||| ||||||||  ||| || || |||||||||| || ||| |||||||||||||||||||||||| ||||||| ||  |||||||||||||||    
T  26214999 attaggaactctaatttaaatctatgctttaattacctctgagggagcaagaaccccacatacatctacgtgtgaaggtgtatccccctataggattgac 26215098  T
Q  691 gaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaa 759  Q
    |||| |||||||||||  |||||||||||| ||||||||  ||||||| || ||||||||  |||||||    
T  26215099 gaccctaagcattaacgcgcgtagaaactccggtgtaagtctgcaacttgacagttggaggggaataaa 26215167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 907 - 1008
Target Start/End: Original strand, 33655719 - 33655820
Alignment:
Q  907 accattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctc 1006  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| ||| |||| |||||||||| ||||  ||||||||||||||| ||||||    
T  33655719 accattaattaatttcaacaaatgaatagaggggattcgaagaatcctaactaccactaacattctgcaatcaaaacaggttacttctaaactatcgctc 33655818  T
Q  1007 tg 1008  Q
    ||    
T  33655819 tg 33655820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 711 - 862
Target Start/End: Original strand, 24187887 - 24188038
Alignment:
Q  711 gtagaaactctggtgtaa-ggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataa 809  Q
    |||| ||||||||||||| |||||||||| || |||||||| ||||| ||| || ||||||||||||||||| || |||| ||||  ||||||||||| |    
T  24187887 gtaggaactctggtgtaatggttgcaact-gaaagttggaggagaatgaactcatacctctgagagagtaagacctcacatgtacctacccgtgtgatca 24187985  T
Q  810 gtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactt 862  Q
    | ||||||||||| |||||| ||||  | |||||||| | |||||||||||||    
T  24187986 gcaggtgcaactcgacagctgataggtagtaaaacccaataaactcatcactt 24188038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 596 - 750
Target Start/End: Original strand, 20404299 - 20404452
Alignment:
Q  596 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacct 695  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||  ||||||||||||| ||| ||||||||||||   |||||||| |||||||||      
T  20404299 gaactctaatttaagtctttgtttcaattacctctgagagagtaattaccccacatacatttacatgcgaaggtgca-ccccctatagaattgacgacac 20404397  T
Q  696 taagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggag 750  Q
    ||||||||||     |||||||||  | ||||||||| |||||  ||||||||||    
T  20404398 taagcattaagacatgtagaaacttcgttgtaaggttacaactgaatagttggag 20404452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 895 - 983
Target Start/End: Complemental strand, 9386330 - 9386242
Alignment:
Q  895 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 983  Q
    |||||||| ||||||||||||||||| ||||||||| ||| |||| | |||||||| ||||||| ||||||| |||||||||| |||||    
T  9386330 gaataatgtttgaccattaattaattccaacaaatggatagagggaattcgaagaatcctaaccgccgctaacattctgcaatcaaaaa 9386242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 616 - 741
Target Start/End: Original strand, 33655518 - 33655643
Alignment:
Q  616 gtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtaga 715  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||  ||||||||||  | ||||| |||||| |||| |||||||| ||   | |||     
T  33655518 gtttcaattacctatgagagagtaaaaaccccacatacatctacgtttgaaggtgcatccctctataagattgatgaccctaagcattgacacacatagg 33655617  T
Q  716 aactctggtgtaaggttgcaactcga 741  Q
    |||||  |||||||||| ||||||||    
T  33655618 aactccagtgtaaggttacaactcga 33655643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 684 - 879
Target Start/End: Complemental strand, 34479000 - 34478810
Alignment:
Q  684 gattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggc 783  Q
    ||||||||||| ||| || |||| || ||||||||||    |||||||||| |||| |||  ||||| ||||| |||| |||||||||||   |||||||    
T  34479000 gattgacgaccgtaaacactaacttgtgtagaaactccaaagtaaggttgccactcaatacgtggaggagaatgaacc-agacctctgag---gtaaggc 34478905  T
Q  784 cccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaa 879  Q
    | |||||| |||||||||||||| | ||||||||||||  ||| || ||||  | |||||| | || ||||||||||||| ||||||| |||||||    
T  34478904 ctcacacgcacaaacccgtgtgaca-gtaggtgcaacttgacacctgataggcagtaaaactctacgaactcatcacttagatagaagacgtaaaa 34478810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 483 - 593
Target Start/End: Complemental strand, 10821728 - 10821616
Alignment:
Q  483 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc--ctcactctaagtctttag 580  Q
    |||||||| ||||||   |||||||||||| | |||||||||||| |||| ||||| || ||  ||||||||| ||||||  |||| ||||||||| |||    
T  10821728 tctcattcgtaatttcttattcagaatgaagcggttcaagaggaaggcaaacactaagagctttaagggaggagtctctctcctcattctaagtctctag 10821629  T
Q  581 ggtatgttttatt 593  Q
    |||||||||||||    
T  10821628 ggtatgttttatt 10821616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 468 - 593
Target Start/End: Original strand, 26214413 - 26214540
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaa--tctctcctc 565  Q
    |||||||||||||  |||||||||||||||| | |||| |||||||| |||||||| ||| ||||  |||||||  | ||||| |  ||  |||||| ||    
T  26214413 tataaatacaacttctctcattcataatttttccttcaaaatgaaacagttcaagaagaaggcaaatactatgaggttcaaggaaaaaatctctctcatc 26214512  T
Q  566 actctaagtctttagggtatgttttatt 593  Q
    |||||||| || |||||||| |||||||    
T  26214513 actctaagactctagggtatattttatt 26214540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 477 - 593
Target Start/End: Complemental strand, 9387183 - 9387065
Alignment:
Q  477 aactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctct--cctcactctaagt 574  Q
    ||||| ||||||||| | |||  ||||||||| | | | |||||||||||| ||||| |||| || || |||||||||| | |||  || ||||||||||    
T  9387183 aactcctctcattcacagtttctcattcagaacgtagcggttcaagaggaaggcaagtactaggagcttcaagggaggagtttctatccacactctaagt 9387084  T
Q  575 ctttagggtatgttttatt 593  Q
    || ||||||||||||||||    
T  9387083 ctctagggtatgttttatt 9387065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 485 - 593
Target Start/End: Complemental strand, 10504699 - 10504589
Alignment:
Q  485 tcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctcactctaagtctttaggg 582  Q
    |||||||||||||  ||||||||| ||| | ||||||||| || |||||||||| ||  | ||||||||||   |||||| |||||| |||||| ||| |    
T  10504699 tcattcataatttctcattcagaacgaagcggttcaagagaaaggcaagcactaggagtttcaagggaggagtttctctcatcactccaagtctctagag 10504600  T
Q  583 tatgttttatt 593  Q
    |||||||||||    
T  10504599 tatgttttatt 10504589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 468 - 593
Target Start/End: Complemental strand, 14882481 - 14882353
Alignment:
Q  468 tataaatacaactcatctcattcataattttgcattcagaatgaaa-ctgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcct 564  Q
    ||||| ||| |||| | |||||||||||| | |||||||||  ||| | |||||||| ||| || | || || || || |||||||||| ||  ||||||    
T  14882481 tataattaccactcctttcattcataattattcattcagaactaaagcggttcaagaagaaggcgaacattaggagcttcaagggaggagtccctctcct 14882382  T
Q  565 cactctaagtctttagggtatgttttatt 593  Q
    |||||||||||| ||||||||||||||||    
T  14882381 cactctaagtctctagggtatgttttatt 14882353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 896 - 941
Target Start/End: Original strand, 20404510 - 20404555
Alignment:
Q  896 aataatgcttgaccattaattaatttcaacaaatgaatatagggga 941  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  20404510 aataatgcttgaccattaattaattccaacaaatgtatagagggga 20404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 758 - 834
Target Start/End: Original strand, 15613859 - 15613935
Alignment:
Q  758 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatag 834  Q
    |||||| |||| |||||||||||  ||||||||||||| || |||||||| || ||||||||||  |||||| ||||    
T  15613859 aacccaaacctttgagagagtaaaaccccacacgtacatacacgtgtgatcagcaggtgcaacttgacagctgatag 15613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 783 - 863
Target Start/End: Complemental strand, 21547286 - 21547206
Alignment:
Q  783 ccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 863  Q
    ||||| ||||||||||| ||||| | | ||||||||||||||||| |  ||| |||| ||||||| | |||||||||||||    
T  21547286 ccccatacgtacaaacctgtgtggtcaataggtgcaactcaacagatggtaggaaatgaaaccccgcgaactcatcactta 21547206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 753 - 869
Target Start/End: Original strand, 28585731 - 28585847
Alignment:
Q  753 gaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaa 852  Q
    |||| |||||| | |||||| |||||||| ||||||||||||  ||| | ||||| |  |||| |||||| |||||| ||||  | ||||||| ||||||    
T  28585731 gaatgaacccatatctctgatagagtaagaccccacacgtacttaccagcgtgatcaacaggttcaactcgacagctgataggtagtaaaacctcacaaa 28585830  T
Q  853 ctcatcacttaaataga 869  Q
    ||||| ||||| |||||    
T  28585831 ctcattacttagataga 28585847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 871
Target Start/End: Complemental strand, 9386455 - 9386343
Alignment:
Q  758 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 857  Q
    |||||||| ||||||||||||| || | |||||||||||||  ||||||| ||||| |||||||  | ||||  |||  | ||||||||||  || ||||    
T  9386455 aacccagaactctgagagagta-ggacacacacgtacaaacttgtgtgatcagtagatgcaacttgaaagctggtaggtagtaaaaccccatgaattcat 9386357  T
Q  858 cacttaaatagaag 871  Q
    |||||| |||||||    
T  9386356 cacttagatagaag 9386343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 767 - 868
Target Start/End: Original strand, 23088053 - 23088153
Alignment:
Q  767 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 866  Q
    ||||||||||||||| ||| ||||||||  ||||||||||| || ||||||||| | | |||| |||   | ||||||||||  |||||||||||| |||    
T  23088053 ctctgagagagtaagaccc-acacgtacctacccgtgtgatcagcaggtgcaacacgatagctgataagtagtaaaaccccatgaactcatcacttgaat 23088151  T
Q  867 ag 868  Q
    ||    
T  23088152 ag 23088153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 614 - 818
Target Start/End: Complemental strand, 12658 - 12454
Alignment:
Q  614 ttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgta 713  Q
    ||||||||||||||| | |||||||||||||||||| ||| |||||| || ||||||||| |||||| | |||||| |||| || |||| || ||| | |    
T  12658 ttgtttcaattacctatgagagagtaagaaccccacgtacctctacgcgcaaaggtgcatctccctacatgattgaagaccctatgcatgaaactgtgga 12559  T
Q  714 gaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtag 813  Q
    ||||||||| ||||| |||||||||||| |  |||||  |||| |||   |||| || ||| |||||| ||||||| |||||||| ||| ||||||||||    
T  12558 gaaactctgttgtaatgttgcaactcgacacctggaggggaattaactatgaccactaagaaagtaagaccccacatgtacaaactcgtatgataagtag 12459  T
Q  814 gtgca 818  Q
    |||||    
T  12458 gtgca 12454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1028 - 1081
Target Start/End: Complemental strand, 12252 - 12199
Alignment:
Q  1028 aaaacccccttttatcttttatttaattt-attgtttattgttcccaaataagta 1081  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  12252 aaaacccccttt-atcttttattttattttattgtttattgttcccaaataagta 12199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 711 - 870
Target Start/End: Complemental strand, 3069 - 2911
Alignment:
Q  711 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 810  Q
    ||||||||||| ||| ||| |||||||| || || |||||   ||| |||||| |||||||| |||||||| ||||||||||||||||  ||||||| ||    
T  3069 gtagaaactctagtggaagattgcaact-gacagctggagggaaatcaacccaaacctctgacagagtaagaccccacacgtacaaacatgtgtgatcag 2971  T
Q  811 taggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaa 870  Q
    || | ||| ||  ||| ||  |||  | ||||||||||||||||||||||||| ||||||    
T  2970 tatgcgcaccttgacatcttgtaggtagtaaaaccccacaaactcatcacttagatagaa 2911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 758 - 983
Target Start/End: Complemental strand, 22621 - 22407
Alignment:
Q  758 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 857  Q
    |||||| |||||||||| | |||| |||||||||||||| | |||||||| ||||||||||| |  |||| |  |||  | ||||| ||||| |||||||    
T  22621 aacccaaacctctgagatattaagaccccacacgtacaatctcgtgtgattagtaggtgcaatttgacagttggtaggtagtaaaatcccacgaactcat 22522  T
Q  858 cacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaac 957  Q
    |||||| ||||||| |||  |||          ||  |||||||||||||||||  | ||||||||||||||||||| |||||| |||||||| ||| ||    
T  22521 cacttagatagaagacgttgaaa----------att-gaataatgcttgaccatagaataatttcaacaaatgaatagaggggattcgaagaatccttac 22433  T
Q  958 caccgctaatattctgcaataaaaaa 983  Q
      ||| ||| | |||||||| |||||    
T  22432 tgccgataacaatctgcaatcaaaaa 22407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 557 - 593
Target Start/End: Complemental strand, 23462 - 23426
Alignment:
Q  557 tctctcctcactctaagtctttagggtatgttttatt 593  Q
    |||||||||||||||||| ||||||||||||||||||    
T  23462 tctctcctcactctaagtttttagggtatgttttatt 23426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 710 - 794
Target Start/End: Original strand, 71277 - 71361
Alignment:
Q  710 cgtagaaactctggtgtaa-ggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtac 794  Q
    ||||| ||||||||||||| |||||||||| ||||| |||||   ||| |||||  ||||||||||||||||| ||||||||||||    
T  71277 cgtaggaactctggtgtaaaggttgcaact-gatagctggagggcaatgaacccttacctctgagagagtaagaccccacacgtac 71361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 13084 - 13158
Alignment:
Q  195 aaagggagaaattctgttctcaagtcctaatacaatcttatatgaaagaaaacactc-aaatgacgaagaaacatg 269  Q
    ||||||||||||| |||||||||||||||| || | |||||||| ||| |||||| | ||| ||||||||||||||    
T  13084 aaagggagaaattatgttctcaagtcctaagac-accttatatggaagcaaacacccaaaaagacgaagaaacatg 13158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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