View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_low_11 (Length: 247)
Name: NF15452_low_11
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 9311365 - 9311144
Alignment:
| Q |
10 |
agaagcttagatttataatgtgtgttgaatcgaacagaaacaaagctttcctttcctctatcccaaggtatccaccacaagcgaaaatggattcgtcgga |
109 |
Q |
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| T |
9311365 |
agaagcttagatttataatatgtgttgaatcgaacagaaacaaagctttcctttcctctatcccaaggtatccaccacaagcgaaaatggattcgtcgga |
9311266 |
T |
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| Q |
110 |
gatcagtgagaaaggagaacagcgaacacgagaaaacgcttccgccagggtcaaaatcaacaatggattcatcatgtaactgaaaaaatcgaacctgatt |
209 |
Q |
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| T |
9311265 |
gatcagtgagaaaggagaacagcgaacacgagaaaacgcttccgccagggtcaaaatcaacaatggattcatcatgtaactgaaaaaatcgaacctgatt |
9311166 |
T |
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| Q |
210 |
gttgacggcggaaacgattgat |
231 |
Q |
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| T |
9311165 |
gctgacggcggaaacgattgat |
9311144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 3283740 - 3283576
Alignment:
| Q |
29 |
gtgtgttgaatcgaacagaaacaaagctttcctttcctctatcccaaggtatccaccacaagcgaaaatggattcgtcggagatcagtgagaaaggagaa |
128 |
Q |
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| T |
3283740 |
gtgtgttgaatcgaacgaacacaaacctttc-tttcctctatcccaaggtatccaccacaagcgaaaatggattcgtcggaggacagtgagaacggagaa |
3283642 |
T |
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| Q |
129 |
cagcgaacacgagaaaacgcttccgccagggtcaaaatcaacaatggattcatcatgtaactgaaa |
194 |
Q |
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| T |
3283641 |
caacgaacacgagaaaacgcttccaccgggatcaaaatcaacaatgaattcgtcatgtaactgaaa |
3283576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 14619760 - 14619672
Alignment:
| Q |
127 |
aacagcgaacacgagaaaacgcttccgccagggtcaaaatcaacaatggattcatcatgtaactgaaaaaatcgaacctgattgttgac |
215 |
Q |
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| T |
14619760 |
aacatcgaagacaagaaaactcttccaccaggatcaaaatcaacaatgaactcatcatggaactggaaaaactgaacctgattgttgac |
14619672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 23565715 - 23565867
Alignment:
| Q |
64 |
cctctatcccaaggtatccaccacaagcgaaaatggattcgtcggagatcagtgagaaaggagaacagcgaacacgagaaaacgcttccgccagggtcaa |
163 |
Q |
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|||| ||||||||||||||||||||| || || || ||| |||| ||| | |||| || |||||||||| ||||||| || |||||||| || || | |
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| T |
23565715 |
cctcgatcccaaggtatccaccacaaccggaattgaatttgtcgaagaactgtgaaaacggagaacagcaaacacgaaccaattcttccgccgggatcga |
23565814 |
T |
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| Q |
164 |
aatcaacaatggattcatcatgtaactgaaaaaatcgaacctgattgttgacg |
216 |
Q |
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||| | || |||||||||||||||| |||| |||| ||||||||||||| |
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| T |
23565815 |
aattgatgattgattcatcatgtaacttgaaaacacgaagctgattgttgacg |
23565867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 9879229 - 9879282
Alignment:
| Q |
176 |
attcatcatgtaactgaaaaaatcgaacctgattgttgacggcggaaacgattg |
229 |
Q |
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|||||||||||||||||||| | | ||||||||||||||| ||||||| |||| |
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| T |
9879229 |
attcatcatgtaactgaaaagactggacctgattgttgacgacggaaacaattg |
9879282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 6790386 - 6790337
Alignment:
| Q |
175 |
gattcatcatgtaactgaaaaaatcgaacctgattgttgacggcggaaac |
224 |
Q |
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| T |
6790386 |
gattcgtcatgtaactgaagaaatcgaagctgattgttgatggcagaaac |
6790337 |
T |
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