View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_low_2 (Length: 797)
Name: NF15452_low_2
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 714; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 1 - 781
Target Start/End: Complemental strand, 46284367 - 46283586
Alignment:
| Q |
1 |
attaactaaaaagtcaagggtaatttgaggtagtgggatcttcaagccaatggaggagcgaacttagaggtcagagaagcaatggtgaaacatgagaagt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46284367 |
attaactaaaaagtcaagggtaatttgaggcagtgggatcttcaagcgaatggaggagcgaacttagaggtcggagaagcaatggtgaaacatgagaagt |
46284268 |
T |
|
| Q |
101 |
tgcctaaaaataatatagtagttggatagaagttctacaagagagtgaaatgcattccgaggattgaagacacagtggttaatcttgtggaactccatat |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46284267 |
tgcctaaaaataatagagtagttggatagaagttctacaagagagtgaaatgcattccgaggattgaagacacaatggttaatcttgtggaactccatat |
46284168 |
T |
|
| Q |
201 |
tgtagttggatgtaaggagaagattgagacttggaagcttctgagactattgaaggtagttggattcaacttgaggttggtgcctaaatcaaggttatga |
300 |
Q |
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| T |
46284167 |
tgtagttggatgtaaggagaagattgagacttggaagcttctgagactattgaaggtagttggattcaacttgaggttggtgcctaaatcaaggttatga |
46284068 |
T |
|
| Q |
301 |
tggaaagagcagtaatggggttaatggttaaattaatgtcatcaccaatttgaagccaatgtgaataattgttgagattatgctcgtaaatcaaatgtag |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46284067 |
tggagagagcagtaatggggttaatggttaaattaatgtcatcgccaatttgaagccaatgtgaataattgttgagattatgctcgtaaatcgaatgtag |
46283968 |
T |
|
| Q |
401 |
attgg-aaaactaattttttagttggctactgccctatttgcgagactcctgatgaggaggtgagatgggtgtcaattgatgttttcaggtgttttgcgc |
499 |
Q |
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| T |
46283967 |
attggaaaaactaattttttagttggctactgccctatttgcgagactcccgatggggaggtgagatgggtgtcaattgatgttttcaggtgttttgcgc |
46283868 |
T |
|
| Q |
500 |
tgcctaacccgcaattcgaacaactcttgtaaattggagctttaggtgcccatgatatgggcaaggcaggtgacgtgattatagagcattactcaaacaa |
599 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46283867 |
tgcctaacccgcaattcaaacaactcttgtaaactggagctttaggtgcccatgatatgggcaaggcaggtgacgtgattatagagcattacttaaacaa |
46283768 |
T |
|
| Q |
600 |
ttttcacttgatttgtagaaaatggggaccaagataggagactcctatgaaacgggctaagttttggtgtcttttgggttgggaaacaccttcgagaatt |
699 |
Q |
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| T |
46283767 |
ttttcacttgatttgtagaaaatgggaaccaagataggagactcctatgaaacgggctaagttttggtgtcttttgggttgggaaacaccttcgagaatt |
46283668 |
T |
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| Q |
700 |
tgattcaatattttaaatattgcataccataacaataataagtgcaaactacataaaggcatcatgtgatactagatgcatt |
781 |
Q |
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| T |
46283667 |
tgattcaatattttaaatattgcataccataacaataataagtgcaaactaaataaaggcatcatgtgatactagatgcatt |
46283586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 34700922 - 34700973
Alignment:
| Q |
199 |
attgtagttggatgtaaggagaagattgagacttggaagcttctgagactat |
250 |
Q |
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|||||||||| ||| ||||||||| | |||||||||||||||||||||||| |
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| T |
34700922 |
attgtagttgcatgcaaggagaaggatcagacttggaagcttctgagactat |
34700973 |
T |
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