View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_low_4 (Length: 518)
Name: NF15452_low_4
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 36 - 510
Target Start/End: Original strand, 414097 - 414546
Alignment:
| Q |
36 |
gatgttgaccgacaagtggaagaagaccatgaaagttagttgggttcgcgcgtgaatgaaaagaggcgcgtggttgtgaaagtaacgcgcgcattagtgg |
135 |
Q |
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| T |
414097 |
gatgttgaccgacaagtggaagaagaccatgaaagttagttgggttcgcgcgtg------------------gttgtgaaagtaacgcgcgcattggtgg |
414178 |
T |
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| Q |
136 |
taagtgttttcttcttcaacacgcaaaatgtaactcattctatttctgtgactatgaacaaaaattgaaaactagtttaacaaagtaattaattataatt |
235 |
Q |
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| T |
414179 |
taagtgttttcttcttcaacacgcaaaatgtaactcattctatttctgtgactatgaacaaaaattgaaaacta-------------attaattataatt |
414265 |
T |
|
| Q |
236 |
atcccataaataaatgctctcaattcgtttcattacatcattctctcatttcgatttcaaatctcactttcttctcttttct------tccgccgcaacc |
329 |
Q |
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| T |
414266 |
atcccataaataaatgctctcaattcgtttcattacatcattctctcatttcaatttcaaatctcactttcttctcttttcttcttcttccgccgcaacc |
414365 |
T |
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| Q |
330 |
atgtcatccaccaccgcaaccaacgccgtctccgccacagatgatgcgaaacacggtttctctcgtcctgagatgtacaaagaaaacctcgctggaaccg |
429 |
Q |
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| T |
414366 |
atgtcatccaccaccgcaaccgacgccgtctccgccacagatgatgcgaaacacggtttctctcgtcctgagatgtacaaagaaaacctcgctggaaccg |
414465 |
T |
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| Q |
430 |
tagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcctccgcgtcttgaagcttctgatgatg |
510 |
Q |
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| T |
414466 |
tagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcctccgcgtcttgaagcttctgatgatg |
414546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 508
Target Start/End: Complemental strand, 401202 - 401079
Alignment:
| Q |
385 |
gtttctctcgtcctgagatgtacaaagaaaacctcgctggaaccgtagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcc |
484 |
Q |
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||||||| ||| |||||||||||| ||||||| |||||||| || | || ||||||||||| || ||||| ||||||||||| | ||||||||||| |
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| T |
401202 |
gtttctcccgttatgagatgtacaagcaaaaccttgctggaacagttgaatcctacgatcgtcatgtctttctatgttacaagaaccaccaaacttggcc |
401103 |
T |
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| Q |
485 |
tccgcgtcttgaagcttctgatga |
508 |
Q |
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|||| || ||||||| || ||||| |
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| T |
401102 |
tccgtgtgttgaagcctccgatga |
401079 |
T |
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