View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_low_6 (Length: 437)
Name: NF15452_low_6
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_low_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 49592310 - 49591890
Alignment:
| Q |
17 |
caaagttttcaaagaatatgctttaaaactctctaccattctaagtcaatcatcttttctcaaccaacaaatagacatgcaggtgctacaaaatacaaac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49592310 |
caaagttttcaaagaatatgctttaaaactctctaccattctaagtcaatcatcttttctcaaccaacaaatagacatgcaggtgctacaaaatacaaac |
49592211 |
T |
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| Q |
117 |
attttttattcatataatatggtttaaatgcacttttaatttcagtgtagtaactgaaatataattttagtcccccaaaaactctattacatannnnnnn |
216 |
Q |
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| T |
49592210 |
attttttattcatataatatggtttaaatgcacttttaatttcagtatagtaactgaaatataattttagtcccccaaaaactctattacatattttttt |
49592111 |
T |
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| Q |
217 |
ccctgttcaaatacaaacctattcttttgatttcctacgtttaggaagacaaaaaatgcatttaagcctgacgatgtttcaaatgtgaatttgcaggagt |
316 |
Q |
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| T |
49592110 |
ccctgttcaaatacaaacctattcttttgatttcctacgtttaggaagacaaaaaatgcatttaagcctgacgatgtttcaaatgtgaatttgcaggagt |
49592011 |
T |
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| Q |
317 |
tattgatgagaatgacattagactccatatgcaaagttggttttggagtggaaattggaacattgaatcctaactcaccaaacaattcttttgctcaagc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49592010 |
tattgatgagaatgacattagactccatatgcaaagttggttttggagtggaaattggaacattgaatcctaactcaccaaacaattcttttgctcaagc |
49591911 |
T |
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| Q |
417 |
ttttgatactgctagtataat |
437 |
Q |
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| T |
49591910 |
ttttgatactgctaatataat |
49591890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 302 - 437
Target Start/End: Original strand, 7235888 - 7236023
Alignment:
| Q |
302 |
tgaatttgcaggagttattgatgagaatgacattagactccatatgcaaagttggttttggagtggaaattggaacattgaatcctaactcaccaaacaa |
401 |
Q |
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| T |
7235888 |
tgaatttttaggagttattgatgagaatgacattagactccatatgcaaagttggttttggagtggaaattggaacattgaatcctaactcaccaaacaa |
7235987 |
T |
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| Q |
402 |
ttcttttgctcaagcttttgatactgctagtataat |
437 |
Q |
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| T |
7235988 |
ttcttttgctcaagcttttgatactgctaatataat |
7236023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 7235735 - 7235876
Alignment:
| Q |
17 |
caaagttttcaaagaatatgctttaaaactctctaccattctaagtcaatcatcttttctcaaccaacaaatagacatgcaggtgctacaaaatacaaac |
116 |
Q |
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| T |
7235735 |
caaagttttcaaagaatatgctttaaaactctcaaccattttaagtcaatcatcttttctcaaccaacaaatagacatgcaggtattac-aaatacaaac |
7235833 |
T |
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| Q |
117 |
attttttattcatataatatggtttaaatgcacttttaatttc |
159 |
Q |
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| T |
7235834 |
attctcgatgcttataatttggtttaaacgcacttttgatttc |
7235876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 426
Target Start/End: Complemental strand, 8017160 - 8017029
Alignment:
| Q |
294 |
ttcaaatgtgaatttgcaggagttattgatgagaatgacattagactccatatgcaaagttggttttggagtggaaattggaacattgaatcctaactca |
393 |
Q |
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| T |
8017160 |
ttcaaatgtgaatttgtaggagttattgatgagaatgacattagaattcatgcacaaagttggtttt-gagtagaaattagaactttgaatcctaactca |
8017062 |
T |
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| Q |
394 |
ccaaacaattcttttgctcaagcttttgatact |
426 |
Q |
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| T |
8017061 |
ccaagaagttcttttgctcaagctttttatact |
8017029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 417
Target Start/End: Complemental strand, 8027077 - 8026952
Alignment:
| Q |
289 |
gatgtttcaaatgtgaatttgcaggagttattgatgagaatgacattagactccatatgcaaagttggttttggagtggaaattggaacattgaatccta |
388 |
Q |
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|||| ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||| || | ||||| |||| |||||||||| |
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| T |
8027077 |
gatggttcaaatgtgaatatgtaggagttattgatgagaatgacattagact--atatgcaaaattggtttttgattaaaaattagaactttgaatccta |
8026980 |
T |
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| Q |
389 |
actcaccaaacaattcttttgctcaagct |
417 |
Q |
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| T |
8026979 |
actcacc-aagaattcctttgctcaagct |
8026952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 419
Target Start/End: Complemental strand, 8039171 - 8039038
Alignment:
| Q |
288 |
cgatgtttcaaatgtgaatttgcaggagttatt---gatgagaatgacattagactccatatgcaaagttggttttggagtggaaattggaacattgaat |
384 |
Q |
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||||| ||||||||||||| || |||||||||| ||||||||||||| | || || | |||||||||||||||| || | |||| | |||| |||||| |
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| T |
8039171 |
cgatggttcaaatgtgaatatgtaggagttattattgatgagaatgacagtggaatctaaatgcaaagttggtttttgattagaaagtagaactttgaat |
8039072 |
T |
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| Q |
385 |
cctaactcaccaaacaattcttttgctcaagcttt |
419 |
Q |
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| T |
8039071 |
cctaactcacc-aagaattcctttgctcaagcttt |
8039038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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