View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_low_8 (Length: 263)
Name: NF15452_low_8
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 5470469 - 5470229
Alignment:
| Q |
23 |
aacaaaatcccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtcnnnnnnnctacc |
122 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5470469 |
aacaaaattccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtctttttttctacc |
5470370 |
T |
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| Q |
123 |
ctactacttataccaacggttttaaccgttatgatgcnnnnnnnaccgttatttctaatggttttacacttcttaaggattttaatgcttcattaaacgc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5470369 |
ctactacttataccaacggttttaaccgttatgatgcttcttttaccgttatttctaatggtttcacacttcttaaggattttaatgcttcattaaacgc |
5470270 |
T |
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| Q |
223 |
tgatgttgaaggtgttgtaactatattgaaagaatatgtta |
263 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
5470269 |
tgatgttgaaggtgttgttactatattgaaagaatatgtta |
5470229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 5476460 - 5476700
Alignment:
| Q |
23 |
aacaaaatcccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtcnnnnnnnctacc |
122 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5476460 |
aacaaagttccatattcaacagctcgtttatcacactcaatattcaactattctttacccgtcagtaaaggtcctaaattcctccgtctttttttctacc |
5476559 |
T |
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| Q |
123 |
ctactacttataccaacggttttaaccgttatgatgcnnnnnnnaccgttatttctaatggttttacacttcttaaggattttaatgcttcattaaacgc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5476560 |
ctactacttataccaacggttttaaccgttatgatgcttcttttaccgttatttctaatggtttcacacttcttaaggattttaatgcttcattaaacgc |
5476659 |
T |
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| Q |
223 |
tgatgttgaaggtgttgtaactatattgaaagaatatgtta |
263 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
5476660 |
tgatgttgaaggtgttgttactatattgaaagaatatgtta |
5476700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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