View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15452_low_9 (Length: 261)
Name: NF15452_low_9
Description: NF15452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15452_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 39559189 - 39558954
Alignment:
| Q |
15 |
agaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39559189 |
agaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcattcaatg |
39559090 |
T |
|
| Q |
115 |
ttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559089 |
ttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttc |
39558990 |
T |
|
| Q |
215 |
aactcctcgtgtcgtaatgattaaatcctttgcttc |
250 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
39558989 |
aactcctcgtgttgtaatgattaaatcctttgcttc |
39558954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 50814500 - 50814322
Alignment:
| Q |
40 |
atgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggt |
139 |
Q |
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| T |
50814500 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgt |
50814404 |
T |
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| Q |
140 |
caaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcct |
221 |
Q |
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| T |
50814403 |
caaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgcttaggttttcaactcct |
50814322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 50861364 - 50861542
Alignment:
| Q |
40 |
atgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggacggt |
139 |
Q |
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||||| || ||||||||| ||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
50861364 |
atgtgaaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttc---gttcaatgttaccctcttcaatttgagggatgt |
50861460 |
T |
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| Q |
140 |
caaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcct |
221 |
Q |
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| T |
50861461 |
caaggttttgctagttagaatgaaagaaggcagtgtggtttcgttaagatggcagagatttatgcttaggttttcaactcct |
50861542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 39558925 - 39558718
Alignment:
| Q |
15 |
agaagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatg |
114 |
Q |
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| T |
39558925 |
agaagtttcatgatgtactcataatgtgggaaaccgacagattctaagtgaaggacttttagcaagggaagattaacgaaaggaacttc---gttcaatg |
39558829 |
T |
|
| Q |
115 |
ttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaaggcaatgtggttttggattta---tggcagagatcgatgcttaggtt |
211 |
Q |
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|||| ||||||||||||||||| |||||||||||| |||||||||| |||| ||||| | || | | ||| ||| | |||||||| |||||||||||| |
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| T |
39558828 |
ttacactcttcaatttgaggactgtcaaggttttggtagttagaaccaaagcaggcagtatgatatcggagttatacttgcagagattgatgcttaggtt |
39558729 |
T |
|
| Q |
212 |
ttcaactcctc |
222 |
Q |
| |
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||||||||||| |
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| T |
39558728 |
ttcaactcctc |
39558718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 50814776 - 50814636
Alignment:
| Q |
37 |
aatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggac |
136 |
Q |
| |
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|||||||| |||||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |
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| T |
50814776 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttg |
50814680 |
T |
|
| Q |
137 |
ggtcaaggttttgttagttagaactaaagaaggcaatgtggttt |
180 |
Q |
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||||| ||||||| ||||||| | |||||||||| | |||||| |
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| T |
50814679 |
ggtcagggttttggtagttaggatgaaagaaggcagtatggttt |
50814636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 50861088 - 50861228
Alignment:
| Q |
37 |
aatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggac |
136 |
Q |
| |
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|||||||| |||||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |
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| T |
50861088 |
aatatgtgaaactgacagattctaagtgaaggacttttagcaagggaagatcaacgaaaggaa---cttggttcaatgttatcctcttcaatttgagttg |
50861184 |
T |
|
| Q |
137 |
ggtcaaggttttgttagttagaactaaagaaggcaatgtggttt |
180 |
Q |
| |
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||||| ||||||| ||||||| | |||||||||| | |||||| |
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| T |
50861185 |
ggtcagggttttggtagttaggatgaaagaaggcagtatggttt |
50861228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 49868709 - 49868793
Alignment:
| Q |
138 |
gtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctc |
222 |
Q |
| |
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|||||||||||| |||| ||||| |||| ||||||||| |||||||| | | |||||||||||||| ||||||||| |||||||| |
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| T |
49868709 |
gtcaaggttttggtagtaagaacgaaagtaggcaatgtagttttggagtaaaggcagagatcgatggttaggtttttaactcctc |
49868793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 49857492 - 49857591
Alignment:
| Q |
37 |
aatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgttaccctcttcaatttgaggac |
136 |
Q |
| |
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|||||||| ||| ||| |||| |||||||| | ||| ||||| |||||||| || |||||| |||| | ||||||||||| |||||||||||||||||| |
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| T |
49857492 |
aatatgtgaaacagacggattccaagtgaaggattttgagcgacggaagatcaaccaaaggaccttcatagttcaatgttatcctcttcaatttgaggac |
49857591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 49760622 - 49760738
Alignment:
| Q |
17 |
aagtttcaagatatagtcagaatatgtgtaactgacagattttaagtgaagcacttttagcgagggaagatcgacgaaaggaacttcttcgttcaatgtt |
116 |
Q |
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||||||||||||||| ||| ||||||||||| ||||| || |||||||| |||| ||||| |||||||| ||| | |||| || | |||||||| |
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| T |
49760622 |
aagtttcaagatatattcataatatgtgtaagtgacaagttccaagtgaagggctttgagcgaaggaagatcaacgtacggaa---ctccagtcaatgtt |
49760718 |
T |
|
| Q |
117 |
accctcttcaatttgaggac |
136 |
Q |
| |
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| |||||||||||||||||| |
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| T |
49760719 |
atcctcttcaatttgaggac |
49760738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 31211027 - 31210971
Alignment:
| Q |
113 |
tgttaccctcttcaatttgaggacggtcaaggttttgttagttagaactaaagaagg |
169 |
Q |
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|||||| |||||||||||||||| |||||||||||| || ||||||| |||||||| |
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| T |
31211027 |
tgttacgctcttcaatttgaggaatgtcaaggttttggtatttagaaccaaagaagg |
31210971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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